Hb_000818_120

Information

Type -
Description -
Location Contig818: 191253-202050
Sequence    

Annotation

kegg
ID rcu:RCOM_1385680
description hypothetical protein
nr
ID XP_002520602.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3N3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1385680 PE=4 SV=1
Gene Ontology
ID GO:0016021
description extended synaptotagmin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59515: 197427-197663 , PASA_asmbl_59516: 198663-198946 , PASA_asmbl_59517: 201687-201955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000818_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001198_080 0.0959338493 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
3 Hb_003106_200 0.0988633776 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
4 Hb_001511_030 0.1015596851 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
5 Hb_000046_310 0.1018706796 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
6 Hb_001155_050 0.1105408606 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
7 Hb_002249_170 0.1106773915 - - copine, putative [Ricinus communis]
8 Hb_007426_220 0.1241624539 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
9 Hb_000787_080 0.1257262681 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
10 Hb_015026_020 0.1259891111 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
11 Hb_011671_340 0.1291752809 - - small GTPase [Hevea brasiliensis]
12 Hb_001863_160 0.1327659025 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
13 Hb_061256_010 0.1350547705 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
14 Hb_002217_190 0.1363388912 - - invertase [Hevea brasiliensis]
15 Hb_000928_250 0.1384431412 - - calcium ion binding protein, putative [Ricinus communis]
16 Hb_021576_150 0.1394165127 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
17 Hb_004659_010 0.142904446 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
18 Hb_104920_010 0.145402282 - - hypothetical protein VITISV_031859 [Vitis vinifera]
19 Hb_012787_030 0.1454759603 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
20 Hb_000684_100 0.1470699017 - - PREDICTED: cell number regulator 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000818_120 Hb_000818_120 Hb_001198_080 Hb_001198_080 Hb_000818_120--Hb_001198_080 Hb_003106_200 Hb_003106_200 Hb_000818_120--Hb_003106_200 Hb_001511_030 Hb_001511_030 Hb_000818_120--Hb_001511_030 Hb_000046_310 Hb_000046_310 Hb_000818_120--Hb_000046_310 Hb_001155_050 Hb_001155_050 Hb_000818_120--Hb_001155_050 Hb_002249_170 Hb_002249_170 Hb_000818_120--Hb_002249_170 Hb_001198_080--Hb_003106_200 Hb_001198_080--Hb_001155_050 Hb_003549_130 Hb_003549_130 Hb_001198_080--Hb_003549_130 Hb_002217_190 Hb_002217_190 Hb_001198_080--Hb_002217_190 Hb_004679_040 Hb_004679_040 Hb_001198_080--Hb_004679_040 Hb_000928_250 Hb_000928_250 Hb_003106_200--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_003106_200--Hb_015026_020 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_007426_220 Hb_007426_220 Hb_001511_030--Hb_007426_220 Hb_001511_030--Hb_002249_170 Hb_012545_030 Hb_012545_030 Hb_001511_030--Hb_012545_030 Hb_004659_010 Hb_004659_010 Hb_001511_030--Hb_004659_010 Hb_001511_030--Hb_001155_050 Hb_001863_160 Hb_001863_160 Hb_000046_310--Hb_001863_160 Hb_018790_050 Hb_018790_050 Hb_000046_310--Hb_018790_050 Hb_000046_310--Hb_001155_050 Hb_080362_010 Hb_080362_010 Hb_000046_310--Hb_080362_010 Hb_007741_130 Hb_007741_130 Hb_000046_310--Hb_007741_130 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_015778_040 Hb_015778_040 Hb_001155_050--Hb_015778_040 Hb_001155_050--Hb_007426_220 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_029253_010 Hb_029253_010 Hb_001155_050--Hb_029253_010 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18089 13.5526 29.7427 11.5666 2.02544 3.34401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.76028 4.62122 5.22245 3.79641 7.86525

CAGE analysis