Hb_000819_080

Information

Type -
Description -
Location Contig819: 139681-142238
Sequence    

Annotation

kegg
ID rcu:RCOM_0705630
description Plastid-lipid-associated protein, chloroplast precursor, putative (EC:1.3.1.74)
nr
ID XP_002524410.1
description Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9ZWQ8
description Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1
trembl
ID B9SEJ1
description Plastid-lipid-associated protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0705630 PE=4 SV=1
Gene Ontology
ID GO:0009535
description plastid-lipid-associated chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59532: 139816-142308 , PASA_asmbl_59533: 140611-140952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000819_080 0.0 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_000302_180 0.070650366 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_003939_050 0.0731021871 - - protein with unknown function [Ricinus communis]
4 Hb_001019_190 0.0833568588 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002681_070 0.0840483991 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
6 Hb_030736_100 0.0852924972 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004155_010 0.0922420534 - - PREDICTED: la protein 1 [Jatropha curcas]
8 Hb_001243_040 0.0968635786 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
9 Hb_027295_050 0.0990654456 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
10 Hb_013607_030 0.0991152886 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
11 Hb_001671_010 0.0992692267 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
12 Hb_005496_130 0.1001011741 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
13 Hb_008785_040 0.1002236561 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
14 Hb_002909_050 0.1004665997 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000160_210 0.100986567 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000329_320 0.1011998566 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
17 Hb_188063_020 0.1043964707 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000804_040 0.1045121836 - - protein with unknown function [Ricinus communis]
19 Hb_024570_010 0.1045487053 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
20 Hb_006502_090 0.1046143603 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000819_080 Hb_000819_080 Hb_000302_180 Hb_000302_180 Hb_000819_080--Hb_000302_180 Hb_003939_050 Hb_003939_050 Hb_000819_080--Hb_003939_050 Hb_001019_190 Hb_001019_190 Hb_000819_080--Hb_001019_190 Hb_002681_070 Hb_002681_070 Hb_000819_080--Hb_002681_070 Hb_030736_100 Hb_030736_100 Hb_000819_080--Hb_030736_100 Hb_004155_010 Hb_004155_010 Hb_000819_080--Hb_004155_010 Hb_000270_260 Hb_000270_260 Hb_000302_180--Hb_000270_260 Hb_000302_180--Hb_003939_050 Hb_022693_140 Hb_022693_140 Hb_000302_180--Hb_022693_140 Hb_000329_320 Hb_000329_320 Hb_000302_180--Hb_000329_320 Hb_000815_070 Hb_000815_070 Hb_000302_180--Hb_000815_070 Hb_003939_050--Hb_030736_100 Hb_029879_010 Hb_029879_010 Hb_003939_050--Hb_029879_010 Hb_000883_020 Hb_000883_020 Hb_003939_050--Hb_000883_020 Hb_001141_020 Hb_001141_020 Hb_003939_050--Hb_001141_020 Hb_007632_030 Hb_007632_030 Hb_003939_050--Hb_007632_030 Hb_001019_190--Hb_002681_070 Hb_024570_010 Hb_024570_010 Hb_001019_190--Hb_024570_010 Hb_000739_310 Hb_000739_310 Hb_001019_190--Hb_000739_310 Hb_000173_290 Hb_000173_290 Hb_001019_190--Hb_000173_290 Hb_000796_220 Hb_000796_220 Hb_001019_190--Hb_000796_220 Hb_008785_040 Hb_008785_040 Hb_002681_070--Hb_008785_040 Hb_006915_070 Hb_006915_070 Hb_002681_070--Hb_006915_070 Hb_000034_040 Hb_000034_040 Hb_002681_070--Hb_000034_040 Hb_005496_130 Hb_005496_130 Hb_002681_070--Hb_005496_130 Hb_003025_110 Hb_003025_110 Hb_030736_100--Hb_003025_110 Hb_030736_100--Hb_000883_020 Hb_000575_040 Hb_000575_040 Hb_030736_100--Hb_000575_040 Hb_002271_030 Hb_002271_030 Hb_030736_100--Hb_002271_030 Hb_000879_200 Hb_000879_200 Hb_030736_100--Hb_000879_200 Hb_004155_010--Hb_030736_100 Hb_000160_210 Hb_000160_210 Hb_004155_010--Hb_000160_210 Hb_000836_440 Hb_000836_440 Hb_004155_010--Hb_000836_440 Hb_077562_050 Hb_077562_050 Hb_004155_010--Hb_077562_050 Hb_000453_170 Hb_000453_170 Hb_004155_010--Hb_000453_170 Hb_004724_060 Hb_004724_060 Hb_004155_010--Hb_004724_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.033 78.951 114.369 37.4601 184.08 152.276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.982 136.241 167.452 110.387 173.532

CAGE analysis