Hb_000820_050

Information

Type -
Description -
Location Contig820: 61519-62841
Sequence    

Annotation

kegg
ID egr:104444969
description uncharacterized LOC104444969
nr
ID KCW59899.1
description hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059B1K9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02626 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59559: 60709-61362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_050 0.0 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
2 Hb_000820_060 0.087460842 - - -
3 Hb_000115_010 0.1501815606 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
4 Hb_105328_010 0.1984911439 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
5 Hb_006268_020 0.2070722676 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
6 Hb_000032_450 0.208810789 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
7 Hb_006472_080 0.2224754091 - - -
8 Hb_001085_150 0.2492907258 - - Purple acid phosphatase 15 [Theobroma cacao]
9 Hb_001045_110 0.2569202066 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
10 Hb_001008_180 0.2571296078 - - -
11 Hb_003050_030 0.2661668076 - - Calcyclin-binding protein, putative [Ricinus communis]
12 Hb_008760_010 0.2664710435 - - berberine bridge enzyme [Hevea brasiliensis]
13 Hb_004846_160 0.2680498257 - - -
14 Hb_002527_050 0.2724568334 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
15 Hb_000450_150 0.2747029095 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
16 Hb_000327_160 0.2765171937 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_099990_010 0.2768542656 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Vitis vinifera]
18 Hb_003044_080 0.2777876983 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
19 Hb_004586_160 0.2836450151 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
20 Hb_025311_020 0.2849102846 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]

Gene co-expression network

sample Hb_000820_050 Hb_000820_050 Hb_000820_060 Hb_000820_060 Hb_000820_050--Hb_000820_060 Hb_000115_010 Hb_000115_010 Hb_000820_050--Hb_000115_010 Hb_105328_010 Hb_105328_010 Hb_000820_050--Hb_105328_010 Hb_006268_020 Hb_006268_020 Hb_000820_050--Hb_006268_020 Hb_000032_450 Hb_000032_450 Hb_000820_050--Hb_000032_450 Hb_006472_080 Hb_006472_080 Hb_000820_050--Hb_006472_080 Hb_000820_060--Hb_000115_010 Hb_000820_060--Hb_006472_080 Hb_000820_060--Hb_105328_010 Hb_000820_060--Hb_000032_450 Hb_000820_060--Hb_006268_020 Hb_000115_010--Hb_000032_450 Hb_000173_440 Hb_000173_440 Hb_000115_010--Hb_000173_440 Hb_000115_010--Hb_006268_020 Hb_001006_220 Hb_001006_220 Hb_000115_010--Hb_001006_220 Hb_105328_010--Hb_000032_450 Hb_001085_150 Hb_001085_150 Hb_105328_010--Hb_001085_150 Hb_083940_010 Hb_083940_010 Hb_105328_010--Hb_083940_010 Hb_000703_280 Hb_000703_280 Hb_105328_010--Hb_000703_280 Hb_105328_010--Hb_006472_080 Hb_052689_010 Hb_052689_010 Hb_006268_020--Hb_052689_010 Hb_000512_070 Hb_000512_070 Hb_006268_020--Hb_000512_070 Hb_008760_010 Hb_008760_010 Hb_006268_020--Hb_008760_010 Hb_004846_160 Hb_004846_160 Hb_006268_020--Hb_004846_160 Hb_003878_050 Hb_003878_050 Hb_000032_450--Hb_003878_050 Hb_000032_450--Hb_000703_280 Hb_007534_060 Hb_007534_060 Hb_000032_450--Hb_007534_060 Hb_026889_040 Hb_026889_040 Hb_000032_450--Hb_026889_040 Hb_006472_080--Hb_001085_150 Hb_006472_070 Hb_006472_070 Hb_006472_080--Hb_006472_070 Hb_000320_260 Hb_000320_260 Hb_006472_080--Hb_000320_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42161 1.67584 7.02598 10.2592 0.629182 0.494557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.650491 0.227431 21.9444 15.7006 7.2147

CAGE analysis