Hb_000820_120

Information

Type -
Description -
Location Contig820: 119437-120540
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15630g
description hypothetical protein
nr
ID XP_012079371.1
description PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12511 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nhl domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59571: 119528-120519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_120 0.0 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
2 Hb_000169_130 0.0783315309 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
3 Hb_000441_070 0.0798490696 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
4 Hb_102129_070 0.0824488269 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
5 Hb_000046_010 0.0834956812 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
6 Hb_000152_340 0.0857670436 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
7 Hb_000345_140 0.0858660757 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
8 Hb_002636_180 0.086643576 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
9 Hb_001902_060 0.0878995625 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
10 Hb_000032_010 0.0888528178 - - crooked neck protein, putative [Ricinus communis]
11 Hb_000664_070 0.0905214912 - - PREDICTED: protein cereblon [Jatropha curcas]
12 Hb_065525_060 0.0906467209 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000304_050 0.0922542823 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
14 Hb_001718_090 0.0925194401 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
15 Hb_003126_030 0.0929157698 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003777_160 0.095224873 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
17 Hb_019153_020 0.0955275483 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
18 Hb_004480_040 0.0966816426 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
19 Hb_000236_220 0.0986820566 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
20 Hb_002890_090 0.0988158162 - - Auxin response factor 1 [Glycine soja]

Gene co-expression network

sample Hb_000820_120 Hb_000820_120 Hb_000169_130 Hb_000169_130 Hb_000820_120--Hb_000169_130 Hb_000441_070 Hb_000441_070 Hb_000820_120--Hb_000441_070 Hb_102129_070 Hb_102129_070 Hb_000820_120--Hb_102129_070 Hb_000046_010 Hb_000046_010 Hb_000820_120--Hb_000046_010 Hb_000152_340 Hb_000152_340 Hb_000820_120--Hb_000152_340 Hb_000345_140 Hb_000345_140 Hb_000820_120--Hb_000345_140 Hb_004480_040 Hb_004480_040 Hb_000169_130--Hb_004480_040 Hb_010738_010 Hb_010738_010 Hb_000169_130--Hb_010738_010 Hb_003785_040 Hb_003785_040 Hb_000169_130--Hb_003785_040 Hb_000169_130--Hb_000441_070 Hb_065525_060 Hb_065525_060 Hb_000169_130--Hb_065525_060 Hb_003633_070 Hb_003633_070 Hb_000169_130--Hb_003633_070 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_000322_150 Hb_000322_150 Hb_000441_070--Hb_000322_150 Hb_000441_070--Hb_004480_040 Hb_076693_020 Hb_076693_020 Hb_000441_070--Hb_076693_020 Hb_003126_030 Hb_003126_030 Hb_102129_070--Hb_003126_030 Hb_008554_120 Hb_008554_120 Hb_102129_070--Hb_008554_120 Hb_005539_190 Hb_005539_190 Hb_102129_070--Hb_005539_190 Hb_001083_030 Hb_001083_030 Hb_102129_070--Hb_001083_030 Hb_000953_030 Hb_000953_030 Hb_102129_070--Hb_000953_030 Hb_000046_010--Hb_001718_090 Hb_000025_360 Hb_000025_360 Hb_000046_010--Hb_000025_360 Hb_000510_310 Hb_000510_310 Hb_000046_010--Hb_000510_310 Hb_006252_020 Hb_006252_020 Hb_000046_010--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_000046_010--Hb_002188_110 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000152_340--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090 Hb_000345_140--Hb_003785_040 Hb_000345_140--Hb_000441_070 Hb_002043_140 Hb_002043_140 Hb_000345_140--Hb_002043_140 Hb_128743_010 Hb_128743_010 Hb_000345_140--Hb_128743_010 Hb_006420_040 Hb_006420_040 Hb_000345_140--Hb_006420_040 Hb_000395_130 Hb_000395_130 Hb_000345_140--Hb_000395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.478 49.4074 18.8239 12.1758 47.3791 25.8918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1703 16.2683 24.8334 27.2009 9.88361

CAGE analysis