Hb_000820_130

Information

Type -
Description -
Location Contig820: 122039-123786
Sequence    

Annotation

kegg
ID tcc:TCM_041879
description hypothetical protein
nr
ID XP_012445300.1
description PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061GXA1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_041879 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59572: 122072-123805
cDNA
(Sanger)
(ID:Location)		 024_I20.ab1: 122085-123805 , 038_N01.ab1: 122075-123801 , 048_N20.ab1: 122147-123788

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_130 0.0 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
2 Hb_002316_120 0.0741520459 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
3 Hb_000789_110 0.0767252319 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
4 Hb_000270_720 0.0794245329 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
5 Hb_000367_210 0.0814740945 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
6 Hb_000780_210 0.0833927388 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
7 Hb_000163_130 0.0834685272 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
8 Hb_000312_090 0.0880222066 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
9 Hb_000069_140 0.091054351 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
10 Hb_002835_320 0.0912885037 - - 60S ribosomal protein L27B [Hevea brasiliensis]
11 Hb_000212_470 0.0963644716 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
12 Hb_001780_050 0.0970253638 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
13 Hb_012539_020 0.0977184415 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
14 Hb_183086_040 0.0984288314 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
15 Hb_001221_310 0.1004082891 - - sec61 gamma subunit, putative [Ricinus communis]
16 Hb_023386_010 0.1012388899 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
17 Hb_001155_040 0.1013577827 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
18 Hb_008699_020 0.1025359591 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
19 Hb_001085_010 0.1031127471 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
20 Hb_000300_390 0.1039935894 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]

Gene co-expression network

sample Hb_000820_130 Hb_000820_130 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_002316_120--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_002316_120--Hb_000300_390 Hb_002316_120--Hb_000270_720 Hb_001377_380 Hb_001377_380 Hb_002316_120--Hb_001377_380 Hb_012539_020 Hb_012539_020 Hb_002316_120--Hb_012539_020 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180 Hb_000789_110--Hb_000270_720 Hb_000789_110--Hb_000300_390 Hb_000789_110--Hb_001377_380 Hb_000789_110--Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_000270_720--Hb_000599_280 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030 Hb_187083_010 Hb_187083_010 Hb_000367_210--Hb_187083_010 Hb_000367_210--Hb_000163_130 Hb_001780_050 Hb_001780_050 Hb_000367_210--Hb_001780_050 Hb_003561_030 Hb_003561_030 Hb_000367_210--Hb_003561_030 Hb_005914_200 Hb_005914_200 Hb_000367_210--Hb_005914_200 Hb_000780_210--Hb_001377_380 Hb_000635_080 Hb_000635_080 Hb_000780_210--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_000780_210--Hb_183086_040 Hb_000780_210--Hb_002316_120 Hb_000780_210--Hb_012539_020 Hb_000163_130--Hb_001780_050 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000905_180 Hb_000905_180 Hb_000163_130--Hb_000905_180 Hb_004754_070 Hb_004754_070 Hb_000163_130--Hb_004754_070 Hb_000236_150 Hb_000236_150 Hb_000163_130--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000163_130--Hb_003053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
158.824 29.0816 60.0189 220.717 116.276 206.415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
720.437 872.633 283.643 171.799 69.0045

CAGE analysis