Hb_000820_150

Information

Type -
Description -
Location Contig820: 136108-140307
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24370g
description POPTRDRAFT_829641; ACT domain-containing family protein
nr
ID XP_012065001.1
description PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
swissprot
ID O80644
description ACT domain-containing protein ACR9 OS=Arabidopsis thaliana GN=ACR9 PE=2 SV=1
trembl
ID A0A067LI17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05677 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing protein acr9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59575: 136282-137467 , PASA_asmbl_59576: 137737-140337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_150 0.0 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
2 Hb_001194_020 0.0787428053 - - microtubule associated protein xmap215, putative [Ricinus communis]
3 Hb_033642_040 0.0793506306 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
4 Hb_098209_010 0.080334757 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
5 Hb_005895_010 0.0805561231 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
6 Hb_003398_100 0.0807350005 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000640_070 0.0865381699 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
8 Hb_073973_150 0.0873972865 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
9 Hb_001153_050 0.0892526875 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
10 Hb_000098_240 0.0920348617 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
11 Hb_000320_470 0.0945950734 - - calcium-dependent protein kinase [Hevea brasiliensis]
12 Hb_000588_080 0.095707941 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
13 Hb_003104_040 0.0967128064 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
14 Hb_000362_170 0.0973135678 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
15 Hb_008397_010 0.0979342854 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
16 Hb_001158_160 0.0980230161 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
17 Hb_002871_140 0.0995403799 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
18 Hb_031091_020 0.1007705773 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_002784_030 0.1011428281 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
20 Hb_006355_020 0.1012864428 - - PREDICTED: CLIP-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_000820_150 Hb_000820_150 Hb_001194_020 Hb_001194_020 Hb_000820_150--Hb_001194_020 Hb_033642_040 Hb_033642_040 Hb_000820_150--Hb_033642_040 Hb_098209_010 Hb_098209_010 Hb_000820_150--Hb_098209_010 Hb_005895_010 Hb_005895_010 Hb_000820_150--Hb_005895_010 Hb_003398_100 Hb_003398_100 Hb_000820_150--Hb_003398_100 Hb_000640_070 Hb_000640_070 Hb_000820_150--Hb_000640_070 Hb_008397_010 Hb_008397_010 Hb_001194_020--Hb_008397_010 Hb_000284_230 Hb_000284_230 Hb_001194_020--Hb_000284_230 Hb_001194_020--Hb_000640_070 Hb_073973_150 Hb_073973_150 Hb_001194_020--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_001194_020--Hb_006355_020 Hb_001059_130 Hb_001059_130 Hb_001194_020--Hb_001059_130 Hb_004096_060 Hb_004096_060 Hb_033642_040--Hb_004096_060 Hb_000098_240 Hb_000098_240 Hb_033642_040--Hb_000098_240 Hb_000175_410 Hb_000175_410 Hb_033642_040--Hb_000175_410 Hb_016777_040 Hb_016777_040 Hb_033642_040--Hb_016777_040 Hb_033642_040--Hb_008397_010 Hb_000457_230 Hb_000457_230 Hb_098209_010--Hb_000457_230 Hb_011972_020 Hb_011972_020 Hb_098209_010--Hb_011972_020 Hb_001377_110 Hb_001377_110 Hb_098209_010--Hb_001377_110 Hb_001723_140 Hb_001723_140 Hb_098209_010--Hb_001723_140 Hb_098209_010--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_098209_010--Hb_002014_040 Hb_000362_170 Hb_000362_170 Hb_005895_010--Hb_000362_170 Hb_002539_110 Hb_002539_110 Hb_005895_010--Hb_002539_110 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_005895_010--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_005895_010--Hb_001002_060 Hb_005895_010--Hb_000640_070 Hb_003398_100--Hb_033642_040 Hb_003104_040 Hb_003104_040 Hb_003398_100--Hb_003104_040 Hb_001789_020 Hb_001789_020 Hb_003398_100--Hb_001789_020 Hb_002784_030 Hb_002784_030 Hb_003398_100--Hb_002784_030 Hb_003398_100--Hb_073973_150 Hb_012215_010 Hb_012215_010 Hb_000640_070--Hb_012215_010 Hb_000640_070--Hb_073973_150 Hb_000640_070--Hb_008397_010 Hb_000640_070--Hb_002784_030 Hb_010272_010 Hb_010272_010 Hb_000640_070--Hb_010272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1366 3.35829 5.38665 4.48677 3.3301 3.91811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13572 0.906483 1.20866 3.17327 5.61718

CAGE analysis