Hb_000820_160

Information

Type -
Description -
Location Contig820: 145097-146839
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59579: 147075-150044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_160 0.0 - - -
2 Hb_032990_020 0.2191192234 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001016_140 0.2573585194 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
4 Hb_131864_030 0.2701829875 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
5 Hb_000413_150 0.2721693495 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
6 Hb_115116_010 0.2745273636 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
7 Hb_012092_100 0.274773152 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005548_030 0.2755510036 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
9 Hb_006545_020 0.279602045 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_005568_100 0.27973123 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
11 Hb_008864_100 0.2837169163 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
12 Hb_000883_170 0.2843105892 - - senescence-associated family protein [Populus trichocarpa]
13 Hb_001369_470 0.2856591226 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
14 Hb_000197_170 0.2863687292 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000107_470 0.2897384469 - - cellulose synthase, putative [Ricinus communis]
16 Hb_014919_020 0.2903305472 - - -
17 Hb_005000_140 0.2935610593 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
18 Hb_006775_070 0.2976067315 - - zinc finger protein, putative [Ricinus communis]
19 Hb_005883_070 0.3001119433 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
20 Hb_000080_160 0.301299419 - - Peroxin 13 [Theobroma cacao]

Gene co-expression network

sample Hb_000820_160 Hb_000820_160 Hb_032990_020 Hb_032990_020 Hb_000820_160--Hb_032990_020 Hb_001016_140 Hb_001016_140 Hb_000820_160--Hb_001016_140 Hb_131864_030 Hb_131864_030 Hb_000820_160--Hb_131864_030 Hb_000413_150 Hb_000413_150 Hb_000820_160--Hb_000413_150 Hb_115116_010 Hb_115116_010 Hb_000820_160--Hb_115116_010 Hb_012092_100 Hb_012092_100 Hb_000820_160--Hb_012092_100 Hb_005548_030 Hb_005548_030 Hb_032990_020--Hb_005548_030 Hb_135569_010 Hb_135569_010 Hb_032990_020--Hb_135569_010 Hb_078160_010 Hb_078160_010 Hb_032990_020--Hb_078160_010 Hb_001767_040 Hb_001767_040 Hb_032990_020--Hb_001767_040 Hb_000181_410 Hb_000181_410 Hb_032990_020--Hb_000181_410 Hb_184008_010 Hb_184008_010 Hb_001016_140--Hb_184008_010 Hb_003751_100 Hb_003751_100 Hb_001016_140--Hb_003751_100 Hb_006472_070 Hb_006472_070 Hb_001016_140--Hb_006472_070 Hb_006545_020 Hb_006545_020 Hb_001016_140--Hb_006545_020 Hb_000272_110 Hb_000272_110 Hb_001016_140--Hb_000272_110 Hb_052434_010 Hb_052434_010 Hb_001016_140--Hb_052434_010 Hb_011609_040 Hb_011609_040 Hb_131864_030--Hb_011609_040 Hb_027472_130 Hb_027472_130 Hb_131864_030--Hb_027472_130 Hb_005883_070 Hb_005883_070 Hb_131864_030--Hb_005883_070 Hb_002942_090 Hb_002942_090 Hb_131864_030--Hb_002942_090 Hb_000058_050 Hb_000058_050 Hb_131864_030--Hb_000058_050 Hb_005675_060 Hb_005675_060 Hb_131864_030--Hb_005675_060 Hb_000197_170 Hb_000197_170 Hb_000413_150--Hb_000197_170 Hb_014919_020 Hb_014919_020 Hb_000413_150--Hb_014919_020 Hb_000406_010 Hb_000406_010 Hb_000413_150--Hb_000406_010 Hb_093385_010 Hb_093385_010 Hb_000413_150--Hb_093385_010 Hb_188411_010 Hb_188411_010 Hb_000413_150--Hb_188411_010 Hb_000413_150--Hb_115116_010 Hb_170516_010 Hb_170516_010 Hb_115116_010--Hb_170516_010 Hb_001907_130 Hb_001907_130 Hb_115116_010--Hb_001907_130 Hb_011344_100 Hb_011344_100 Hb_115116_010--Hb_011344_100 Hb_115116_010--Hb_005675_060 Hb_115116_010--Hb_014919_020 Hb_008864_100 Hb_008864_100 Hb_012092_100--Hb_008864_100 Hb_000925_040 Hb_000925_040 Hb_012092_100--Hb_000925_040 Hb_002631_190 Hb_002631_190 Hb_012092_100--Hb_002631_190 Hb_000010_300 Hb_000010_300 Hb_012092_100--Hb_000010_300 Hb_012092_100--Hb_006472_070 Hb_006289_020 Hb_006289_020 Hb_012092_100--Hb_006289_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285511 0.475677 1.1051 0.605381 0.379415 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.278544 0.386395 0

CAGE analysis