Hb_000820_170

Information

Type -
Description -
Location Contig820: 147066-150072
Sequence    

Annotation

kegg
ID gmx:100817317
description THO complex subunit 4-like
nr
ID XP_012064998.1
description PREDICTED: THO complex subunit 4A [Jatropha curcas]
swissprot
ID Q8L773
description THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1
trembl
ID A0A067LAK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05675 PE=4 SV=1
Gene Ontology
ID GO:0000166
description tho complex subunit 4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59579: 147075-150044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_170 0.0 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
2 Hb_006252_040 0.0473316812 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
3 Hb_003428_070 0.0633145414 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
4 Hb_016898_010 0.0647717733 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
5 Hb_005731_030 0.0653495717 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
6 Hb_000101_240 0.0657722796 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
7 Hb_123352_020 0.0668937762 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
8 Hb_020000_020 0.0670023167 - - Troponin C, skeletal muscle, putative [Ricinus communis]
9 Hb_048476_180 0.0670494891 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
10 Hb_004724_060 0.0672186856 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
11 Hb_004447_060 0.0676986594 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
12 Hb_003362_070 0.0679217798 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
13 Hb_004102_140 0.0680498972 - - conserved hypothetical protein [Ricinus communis]
14 Hb_023386_040 0.0685387688 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
15 Hb_001797_050 0.0706200023 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
16 Hb_011139_030 0.0707234815 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
17 Hb_007163_090 0.0708287684 - - PREDICTED: protein spt2-like [Jatropha curcas]
18 Hb_000025_110 0.0708895191 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
19 Hb_000457_260 0.0724582059 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
20 Hb_009411_010 0.0725384469 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]

Gene co-expression network

sample Hb_000820_170 Hb_000820_170 Hb_006252_040 Hb_006252_040 Hb_000820_170--Hb_006252_040 Hb_003428_070 Hb_003428_070 Hb_000820_170--Hb_003428_070 Hb_016898_010 Hb_016898_010 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000101_240 Hb_000101_240 Hb_000820_170--Hb_000101_240 Hb_123352_020 Hb_123352_020 Hb_000820_170--Hb_123352_020 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_003952_070 Hb_003952_070 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_003428_070--Hb_016898_010 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_003362_070 Hb_003362_070 Hb_016898_010--Hb_003362_070 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_010222_050 Hb_010222_050 Hb_005731_030--Hb_010222_050 Hb_003029_110 Hb_003029_110 Hb_005731_030--Hb_003029_110 Hb_005731_030--Hb_123352_020 Hb_002518_280 Hb_002518_280 Hb_005731_030--Hb_002518_280 Hb_010618_010 Hb_010618_010 Hb_005731_030--Hb_010618_010 Hb_009411_010 Hb_009411_010 Hb_000101_240--Hb_009411_010 Hb_000101_240--Hb_000084_120 Hb_000101_240--Hb_048476_180 Hb_000101_240--Hb_003362_070 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_000487_290 Hb_000487_290 Hb_123352_020--Hb_000487_290 Hb_007163_090 Hb_007163_090 Hb_123352_020--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.2444 54.3051 39.9238 36.7008 71.255 122.558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.4159 51.8373 63.5022 54.355 44.3282

CAGE analysis