Hb_000821_010

Information

Type -
Description -
Location Contig821: 77769-85750
Sequence    

Annotation

kegg
ID rcu:RCOM_1657600
description Auxin response factor, putative
nr
ID XP_012084285.1
description PREDICTED: auxin response factor 19-like [Jatropha curcas]
swissprot
ID Q6Z2W3
description Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2
trembl
ID A0A067JV56
description Auxin response factor OS=Jatropha curcas GN=JCGZ_19776 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59599: 77889-78052 , PASA_asmbl_59600: 78073-80249 , PASA_asmbl_59601: 80436-85750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000821_010 0.0 - - PREDICTED: auxin response factor 19-like [Jatropha curcas]
2 Hb_000002_440 0.0844777533 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_004920_130 0.0898006507 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
4 Hb_000594_020 0.0905890799 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
5 Hb_000264_100 0.0919819588 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010080_060 0.0949342092 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_000997_030 0.09768848 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
8 Hb_000120_610 0.0989400508 - - mitotic control protein dis3, putative [Ricinus communis]
9 Hb_000813_100 0.0998102121 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
10 Hb_015763_020 0.1013956152 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
11 Hb_033883_060 0.1045639209 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
12 Hb_001633_040 0.1048216558 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
13 Hb_008568_010 0.1061013671 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
14 Hb_003299_070 0.106304445 - - AMP deaminase [Theobroma cacao]
15 Hb_000023_060 0.1065157409 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
16 Hb_005122_080 0.1093294988 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
17 Hb_110482_010 0.1099242231 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
18 Hb_000107_040 0.1103293622 - - nuclear pore complex protein nup153, putative [Ricinus communis]
19 Hb_000227_380 0.1117102518 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
20 Hb_031042_070 0.1129833161 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000821_010 Hb_000821_010 Hb_000002_440 Hb_000002_440 Hb_000821_010--Hb_000002_440 Hb_004920_130 Hb_004920_130 Hb_000821_010--Hb_004920_130 Hb_000594_020 Hb_000594_020 Hb_000821_010--Hb_000594_020 Hb_000264_100 Hb_000264_100 Hb_000821_010--Hb_000264_100 Hb_010080_060 Hb_010080_060 Hb_000821_010--Hb_010080_060 Hb_000997_030 Hb_000997_030 Hb_000821_010--Hb_000997_030 Hb_025477_060 Hb_025477_060 Hb_000002_440--Hb_025477_060 Hb_000227_380 Hb_000227_380 Hb_000002_440--Hb_000227_380 Hb_000813_100 Hb_000813_100 Hb_000002_440--Hb_000813_100 Hb_000096_180 Hb_000096_180 Hb_000002_440--Hb_000096_180 Hb_000002_440--Hb_000594_020 Hb_002883_010 Hb_002883_010 Hb_000002_440--Hb_002883_010 Hb_002659_060 Hb_002659_060 Hb_004920_130--Hb_002659_060 Hb_033883_060 Hb_033883_060 Hb_004920_130--Hb_033883_060 Hb_001157_180 Hb_001157_180 Hb_004920_130--Hb_001157_180 Hb_031042_070 Hb_031042_070 Hb_004920_130--Hb_031042_070 Hb_004920_130--Hb_000813_100 Hb_000120_610 Hb_000120_610 Hb_000594_020--Hb_000120_610 Hb_000594_020--Hb_000813_100 Hb_000594_020--Hb_002659_060 Hb_004899_070 Hb_004899_070 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_004970_160 Hb_004970_160 Hb_000594_020--Hb_004970_160 Hb_000264_100--Hb_000120_610 Hb_000264_100--Hb_000997_030 Hb_030565_090 Hb_030565_090 Hb_000264_100--Hb_030565_090 Hb_140049_020 Hb_140049_020 Hb_000264_100--Hb_140049_020 Hb_000264_100--Hb_000594_020 Hb_000264_100--Hb_004899_070 Hb_004310_050 Hb_004310_050 Hb_010080_060--Hb_004310_050 Hb_010080_060--Hb_000227_380 Hb_033152_080 Hb_033152_080 Hb_010080_060--Hb_033152_080 Hb_010080_060--Hb_000002_440 Hb_000997_090 Hb_000997_090 Hb_010080_060--Hb_000997_090 Hb_005122_080 Hb_005122_080 Hb_010080_060--Hb_005122_080 Hb_000997_030--Hb_030565_090 Hb_000997_030--Hb_000813_100 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.7728 34.8193 8.85152 8.16108 35.8616 44.4604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3773 4.52923 12.6396 29.5675 12.3007

CAGE analysis