Hb_000821_030

Information

Type -
Description -
Location Contig821: 127267-131285
Sequence    

Annotation

kegg
ID pop:POPTR_0015s15790g
description POPTRDRAFT_776473; hypothetical protein
nr
ID XP_012092634.1
description PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
swissprot
ID D1FP57
description Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN PE=1 SV=1
trembl
ID A0A067J9D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59602: 127280-127870 , PASA_asmbl_59603: 127989-128274 , PASA_asmbl_59604: 128445-131390 , PASA_asmbl_59605: 130094-130557 , PASA_asmbl_59606: 129697-129998 , PASA_asmbl_59607: 128298-129203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000821_030 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
2 Hb_000262_090 0.0328091069 - - Root phototropism protein, putative [Ricinus communis]
3 Hb_008013_020 0.0451512304 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
4 Hb_000210_030 0.0497509646 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
5 Hb_006573_110 0.0506651184 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
6 Hb_002245_050 0.0511470942 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
7 Hb_000174_120 0.0536245155 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_001638_060 0.0542389448 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
9 Hb_015807_120 0.0572249479 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
10 Hb_000414_040 0.0601050174 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
11 Hb_000018_110 0.0601832028 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
12 Hb_003605_170 0.0606572029 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
13 Hb_003921_020 0.0613132796 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
14 Hb_005797_020 0.0617382591 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
15 Hb_000142_050 0.0637868107 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
16 Hb_000030_070 0.0643755792 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011433_010 0.065517319 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
18 Hb_001233_050 0.0665211978 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
19 Hb_003836_040 0.0675799039 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
20 Hb_002818_110 0.068649585 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]

Gene co-expression network

sample Hb_000821_030 Hb_000821_030 Hb_000262_090 Hb_000262_090 Hb_000821_030--Hb_000262_090 Hb_008013_020 Hb_008013_020 Hb_000821_030--Hb_008013_020 Hb_000210_030 Hb_000210_030 Hb_000821_030--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_000821_030--Hb_006573_110 Hb_002245_050 Hb_002245_050 Hb_000821_030--Hb_002245_050 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120 Hb_000262_090--Hb_000210_030 Hb_000262_090--Hb_008013_020 Hb_000262_090--Hb_006573_110 Hb_000018_110 Hb_000018_110 Hb_000262_090--Hb_000018_110 Hb_002818_110 Hb_002818_110 Hb_000262_090--Hb_002818_110 Hb_008013_020--Hb_006573_110 Hb_003921_020 Hb_003921_020 Hb_008013_020--Hb_003921_020 Hb_008013_020--Hb_002818_110 Hb_008013_020--Hb_000210_030 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_000210_030--Hb_002818_110 Hb_001675_090 Hb_001675_090 Hb_000210_030--Hb_001675_090 Hb_000210_030--Hb_006573_110 Hb_006573_110--Hb_003921_020 Hb_006573_110--Hb_002818_110 Hb_000635_240 Hb_000635_240 Hb_002245_050--Hb_000635_240 Hb_002245_050--Hb_000018_110 Hb_001433_210 Hb_001433_210 Hb_002245_050--Hb_001433_210 Hb_000142_050 Hb_000142_050 Hb_002245_050--Hb_000142_050 Hb_002929_030 Hb_002929_030 Hb_002245_050--Hb_002929_030 Hb_000414_040 Hb_000414_040 Hb_000174_120--Hb_000414_040 Hb_005797_020 Hb_005797_020 Hb_000174_120--Hb_005797_020 Hb_009692_050 Hb_009692_050 Hb_000174_120--Hb_009692_050 Hb_003836_040 Hb_003836_040 Hb_000174_120--Hb_003836_040 Hb_002284_290 Hb_002284_290 Hb_000174_120--Hb_002284_290 Hb_003605_170 Hb_003605_170 Hb_000174_120--Hb_003605_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0317618 2.77578 0.492959 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00909437 2.10344

CAGE analysis