Hb_000825_010

Information

Type -
Description -
Location Contig825: 7793-11606
Sequence    

Annotation

kegg
ID fve:101294342
description trans-cinnamate 4-monooxygenase-like
nr
ID XP_012078176.1
description PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
swissprot
ID Q42797
description Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1
trembl
ID A0A067LB95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17318 PE=3 SV=1
Gene Ontology
ID GO:0005506
description trans-cinnamate 4-monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59691: 7975-11581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000825_010 0.0 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
2 Hb_001104_080 0.0291757263 - - peroxiredoxin, putative [Ricinus communis]
3 Hb_000923_030 0.0461998289 - - F-box family protein [Populus trichocarpa]
4 Hb_000251_160 0.0481197514 - - chlorophyll A/B binding protein, putative [Ricinus communis]
5 Hb_007559_020 0.0486917619 - - peptidylprolyl isomerase, putative [Ricinus communis]
6 Hb_132840_050 0.0504176592 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
7 Hb_005605_020 0.0528916702 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_153106_010 0.0533430296 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
9 Hb_004129_170 0.0540366116 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
10 Hb_016334_010 0.0546450538 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
11 Hb_097940_010 0.0548920833 - - pollen protein Ole E I-like protein [Medicago truncatula]
12 Hb_000805_080 0.0595318182 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
13 Hb_032631_060 0.0602057757 - - Myosin heavy chain, putative [Ricinus communis]
14 Hb_107748_010 0.0604457921 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
15 Hb_086022_020 0.0605257892 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
16 Hb_011068_010 0.0621735575 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
17 Hb_000139_010 0.0622649066 - - -
18 Hb_000640_090 0.0638019037 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
19 Hb_004116_030 0.0646144937 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
20 Hb_001046_060 0.0652710742 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000825_010 Hb_000825_010 Hb_001104_080 Hb_001104_080 Hb_000825_010--Hb_001104_080 Hb_000923_030 Hb_000923_030 Hb_000825_010--Hb_000923_030 Hb_000251_160 Hb_000251_160 Hb_000825_010--Hb_000251_160 Hb_007559_020 Hb_007559_020 Hb_000825_010--Hb_007559_020 Hb_132840_050 Hb_132840_050 Hb_000825_010--Hb_132840_050 Hb_005605_020 Hb_005605_020 Hb_000825_010--Hb_005605_020 Hb_032631_060 Hb_032631_060 Hb_001104_080--Hb_032631_060 Hb_001104_080--Hb_000923_030 Hb_000805_080 Hb_000805_080 Hb_001104_080--Hb_000805_080 Hb_001104_080--Hb_007559_020 Hb_000010_380 Hb_000010_380 Hb_001104_080--Hb_000010_380 Hb_003090_050 Hb_003090_050 Hb_000923_030--Hb_003090_050 Hb_001287_070 Hb_001287_070 Hb_000923_030--Hb_001287_070 Hb_000923_030--Hb_000805_080 Hb_008748_050 Hb_008748_050 Hb_000923_030--Hb_008748_050 Hb_004129_170 Hb_004129_170 Hb_000251_160--Hb_004129_170 Hb_086022_020 Hb_086022_020 Hb_000251_160--Hb_086022_020 Hb_002374_480 Hb_002374_480 Hb_000251_160--Hb_002374_480 Hb_153106_010 Hb_153106_010 Hb_000251_160--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_000251_160--Hb_180007_010 Hb_000251_160--Hb_132840_050 Hb_097940_010 Hb_097940_010 Hb_007559_020--Hb_097940_010 Hb_000139_010 Hb_000139_010 Hb_007559_020--Hb_000139_010 Hb_001279_380 Hb_001279_380 Hb_007559_020--Hb_001279_380 Hb_027403_010 Hb_027403_010 Hb_007559_020--Hb_027403_010 Hb_008566_060 Hb_008566_060 Hb_007559_020--Hb_008566_060 Hb_132840_050--Hb_153106_010 Hb_132840_050--Hb_180007_010 Hb_000243_190 Hb_000243_190 Hb_132840_050--Hb_000243_190 Hb_016334_010 Hb_016334_010 Hb_132840_050--Hb_016334_010 Hb_011068_010 Hb_011068_010 Hb_005605_020--Hb_011068_010 Hb_001046_060 Hb_001046_060 Hb_005605_020--Hb_001046_060 Hb_003337_080 Hb_003337_080 Hb_005605_020--Hb_003337_080 Hb_000640_090 Hb_000640_090 Hb_005605_020--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_005605_020--Hb_107748_010 Hb_005605_020--Hb_000805_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.275722 41.1979 11.152 0.019477 0.0096805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0228471 0 0 0.0429162 116.291

CAGE analysis