Hb_000826_010

Information

Type -
Description -
Location Contig826: 11330-13361
Sequence    

Annotation

kegg
ID rcu:RCOM_1136630
description hypothetical protein
nr
ID XP_002517749.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9RVI0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1136630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59715: 11723-13265 , PASA_asmbl_59716: 12531-12783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000826_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002421_150 0.0485216593 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
3 Hb_002701_250 0.0516078601 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
4 Hb_009771_090 0.0614436797 - - -
5 Hb_000329_430 0.0638381668 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
6 Hb_000098_040 0.0687069661 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
7 Hb_001269_030 0.0764682003 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
8 Hb_000373_160 0.0777620234 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
9 Hb_000307_100 0.0780887811 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
10 Hb_014361_120 0.079031722 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
11 Hb_000352_230 0.0792845808 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_005054_120 0.0821753544 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
13 Hb_000545_180 0.0853419 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
14 Hb_002289_070 0.0878216813 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
15 Hb_003925_120 0.0920548739 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_004128_170 0.0956794899 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
17 Hb_009193_070 0.0972087395 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
18 Hb_001564_120 0.1009482634 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
19 Hb_020367_040 0.1022032868 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
20 Hb_002852_010 0.1042560304 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000826_010 Hb_000826_010 Hb_002421_150 Hb_002421_150 Hb_000826_010--Hb_002421_150 Hb_002701_250 Hb_002701_250 Hb_000826_010--Hb_002701_250 Hb_009771_090 Hb_009771_090 Hb_000826_010--Hb_009771_090 Hb_000329_430 Hb_000329_430 Hb_000826_010--Hb_000329_430 Hb_000098_040 Hb_000098_040 Hb_000826_010--Hb_000098_040 Hb_001269_030 Hb_001269_030 Hb_000826_010--Hb_001269_030 Hb_000373_160 Hb_000373_160 Hb_002421_150--Hb_000373_160 Hb_002421_150--Hb_002701_250 Hb_002421_150--Hb_000329_430 Hb_003925_120 Hb_003925_120 Hb_002421_150--Hb_003925_120 Hb_002421_150--Hb_001269_030 Hb_002289_070 Hb_002289_070 Hb_002701_250--Hb_002289_070 Hb_002701_250--Hb_000373_160 Hb_020367_040 Hb_020367_040 Hb_002701_250--Hb_020367_040 Hb_002701_250--Hb_000098_040 Hb_000482_180 Hb_000482_180 Hb_002701_250--Hb_000482_180 Hb_000352_230 Hb_000352_230 Hb_009771_090--Hb_000352_230 Hb_009771_090--Hb_000098_040 Hb_009771_090--Hb_000329_430 Hb_000545_180 Hb_000545_180 Hb_009771_090--Hb_000545_180 Hb_000307_100 Hb_000307_100 Hb_009771_090--Hb_000307_100 Hb_014361_120 Hb_014361_120 Hb_009771_090--Hb_014361_120 Hb_000329_430--Hb_000307_100 Hb_000329_430--Hb_000098_040 Hb_000329_430--Hb_003925_120 Hb_000329_430--Hb_000352_230 Hb_000098_040--Hb_000352_230 Hb_000098_040--Hb_000307_100 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_002809_030 Hb_002809_030 Hb_000098_040--Hb_002809_030 Hb_001269_030--Hb_000545_180 Hb_001892_080 Hb_001892_080 Hb_001269_030--Hb_001892_080 Hb_001269_030--Hb_009771_090 Hb_001269_030--Hb_000373_160 Hb_001028_040 Hb_001028_040 Hb_001269_030--Hb_001028_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.25136 26.3745 21.693 0 0.0335358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0260173 0 0 0.130474 87.4214

CAGE analysis