Hb_000826_030

Information

Type -
Description -
Location Contig826: 43072-48031
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15030g
description POPTRDRAFT_239920; hypothetical protein
nr
ID XP_012078395.1
description PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
swissprot
ID O22928
description Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=3 SV=1
trembl
ID A0A067LBA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17338 PE=4 SV=1
Gene Ontology
ID GO:0003723
description trna pseudouridine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59717: 43083-48037 , PASA_asmbl_59718: 46292-48000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000826_030 0.0 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
2 Hb_001158_160 0.0614575772 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
3 Hb_002876_300 0.0666249898 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
4 Hb_030414_040 0.0763163871 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
5 Hb_010174_090 0.0774890643 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
6 Hb_012438_030 0.0832612149 - - PREDICTED: protein sym-1 [Jatropha curcas]
7 Hb_000364_100 0.0840006717 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
8 Hb_007283_010 0.086173719 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
9 Hb_168893_030 0.090198342 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
10 Hb_000120_210 0.0908720841 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
11 Hb_004096_240 0.0921110379 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
12 Hb_113853_010 0.0924703131 - - 50S ribosomal protein L2, putative [Ricinus communis]
13 Hb_002218_020 0.0930151174 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
14 Hb_003752_070 0.093027175 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
15 Hb_005162_110 0.0934259771 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
16 Hb_114310_070 0.0935522882 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
17 Hb_009476_130 0.0941254839 - - hypothetical protein VITISV_005430 [Vitis vinifera]
18 Hb_005288_070 0.0944407052 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_006569_040 0.0945329856 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
20 Hb_003529_140 0.0949266227 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000826_030 Hb_000826_030 Hb_001158_160 Hb_001158_160 Hb_000826_030--Hb_001158_160 Hb_002876_300 Hb_002876_300 Hb_000826_030--Hb_002876_300 Hb_030414_040 Hb_030414_040 Hb_000826_030--Hb_030414_040 Hb_010174_090 Hb_010174_090 Hb_000826_030--Hb_010174_090 Hb_012438_030 Hb_012438_030 Hb_000826_030--Hb_012438_030 Hb_000364_100 Hb_000364_100 Hb_000826_030--Hb_000364_100 Hb_001158_160--Hb_030414_040 Hb_021943_080 Hb_021943_080 Hb_001158_160--Hb_021943_080 Hb_031284_010 Hb_031284_010 Hb_001158_160--Hb_031284_010 Hb_000120_210 Hb_000120_210 Hb_001158_160--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_001158_160--Hb_004096_240 Hb_002876_300--Hb_030414_040 Hb_000035_090 Hb_000035_090 Hb_002876_300--Hb_000035_090 Hb_005946_040 Hb_005946_040 Hb_002876_300--Hb_005946_040 Hb_113853_010 Hb_113853_010 Hb_002876_300--Hb_113853_010 Hb_002876_300--Hb_012438_030 Hb_030414_040--Hb_000120_210 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_000111_170 Hb_000111_170 Hb_030414_040--Hb_000111_170 Hb_000311_120 Hb_000311_120 Hb_010174_090--Hb_000311_120 Hb_000613_120 Hb_000613_120 Hb_010174_090--Hb_000613_120 Hb_006787_090 Hb_006787_090 Hb_010174_090--Hb_006787_090 Hb_003529_140 Hb_003529_140 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_087313_010 Hb_087313_010 Hb_012438_030--Hb_087313_010 Hb_001703_040 Hb_001703_040 Hb_012438_030--Hb_001703_040 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010 Hb_000532_100 Hb_000532_100 Hb_000364_100--Hb_000532_100 Hb_004994_080 Hb_004994_080 Hb_000364_100--Hb_004994_080 Hb_000364_100--Hb_001158_160 Hb_000284_130 Hb_000284_130 Hb_000364_100--Hb_000284_130 Hb_011386_050 Hb_011386_050 Hb_000364_100--Hb_011386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.951752 1.60195 3.60035 1.45271 1.37392 1.54127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21494 1.11271 0.625885 1.389 2.95695

CAGE analysis