Hb_000826_070

Information

Type -
Description -
Location Contig826: 125621-136745
Sequence    

Annotation

kegg
ID rcu:RCOM_1135520
description hypothetical protein
nr
ID XP_002517728.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LPR9
description Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110 PE=1 SV=1
trembl
ID B9RVF9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1135520 PE=4 SV=1
Gene Ontology
ID GO:0031897
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59719: 126000-136723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000826_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001999_140 0.0549352178 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_013459_020 0.0620955615 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
4 Hb_000664_120 0.0625878706 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
5 Hb_005211_020 0.069989394 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
6 Hb_000568_050 0.0705306288 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
7 Hb_012055_110 0.071039614 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
8 Hb_000011_270 0.0733812043 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
9 Hb_000934_210 0.0779978818 - - suppressor of ty, putative [Ricinus communis]
10 Hb_002357_070 0.0794969269 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
11 Hb_011174_020 0.0814370835 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
12 Hb_000377_050 0.0825066557 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
13 Hb_002461_020 0.0829051978 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
14 Hb_001008_070 0.0835639995 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
15 Hb_000029_350 0.0851187914 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
16 Hb_004306_030 0.0853142981 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
17 Hb_001221_180 0.0854585918 - - calcineurin-like phosphoesterase [Manihot esculenta]
18 Hb_002007_110 0.0861712431 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
19 Hb_000925_090 0.0862834443 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
20 Hb_005832_010 0.0877117911 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000826_070 Hb_000826_070 Hb_001999_140 Hb_001999_140 Hb_000826_070--Hb_001999_140 Hb_013459_020 Hb_013459_020 Hb_000826_070--Hb_013459_020 Hb_000664_120 Hb_000664_120 Hb_000826_070--Hb_000664_120 Hb_005211_020 Hb_005211_020 Hb_000826_070--Hb_005211_020 Hb_000568_050 Hb_000568_050 Hb_000826_070--Hb_000568_050 Hb_012055_110 Hb_012055_110 Hb_000826_070--Hb_012055_110 Hb_001999_140--Hb_000664_120 Hb_001999_140--Hb_013459_020 Hb_001221_180 Hb_001221_180 Hb_001999_140--Hb_001221_180 Hb_003093_040 Hb_003093_040 Hb_001999_140--Hb_003093_040 Hb_002357_070 Hb_002357_070 Hb_001999_140--Hb_002357_070 Hb_017469_110 Hb_017469_110 Hb_013459_020--Hb_017469_110 Hb_011174_020 Hb_011174_020 Hb_013459_020--Hb_011174_020 Hb_002973_110 Hb_002973_110 Hb_013459_020--Hb_002973_110 Hb_001008_070 Hb_001008_070 Hb_013459_020--Hb_001008_070 Hb_005701_050 Hb_005701_050 Hb_000664_120--Hb_005701_050 Hb_000934_210 Hb_000934_210 Hb_000664_120--Hb_000934_210 Hb_000035_100 Hb_000035_100 Hb_000664_120--Hb_000035_100 Hb_002461_020 Hb_002461_020 Hb_000664_120--Hb_002461_020 Hb_002600_060 Hb_002600_060 Hb_005211_020--Hb_002600_060 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_005211_020--Hb_013459_020 Hb_000925_090 Hb_000925_090 Hb_005211_020--Hb_000925_090 Hb_000568_050--Hb_011174_020 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000011_270 Hb_000011_270 Hb_000568_050--Hb_000011_270 Hb_000568_050--Hb_000608_300 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_012055_110--Hb_002357_070 Hb_012055_110--Hb_005701_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1479 23.8562 18.4858 14.3563 14.7387 14.4137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.09731 7.22548 4.91343 20.9798 31.141

CAGE analysis