Hb_000826_100

Information

Type -
Description -
Location Contig826: 194073-195883
Sequence    

Annotation

kegg
ID rcu:RCOM_1135500
description hypothetical protein
nr
ID XP_012078383.1
description PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
swissprot
ID O22929
description Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana GN=BLOS1 PE=1 SV=1
trembl
ID A0A067LMV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17336 PE=4 SV=1
Gene Ontology
ID GO:0031083
description biogenesis of lysosome-related organelles complex 1 subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59721: 194868-195735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000826_100 0.0 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
2 Hb_003605_160 0.0557431182 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
3 Hb_000189_240 0.0600639967 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
4 Hb_007441_330 0.07253177 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
5 Hb_008071_020 0.0728963163 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
6 Hb_026314_020 0.0802987046 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
7 Hb_026053_020 0.0826638463 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
8 Hb_000107_300 0.0866228943 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
9 Hb_000996_140 0.0876220533 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
10 Hb_002303_060 0.0887088769 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000317_390 0.08953679 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
12 Hb_001318_250 0.0904468576 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
13 Hb_000005_090 0.0931234626 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
14 Hb_010175_040 0.0935422589 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
15 Hb_002343_060 0.0935988793 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
16 Hb_000103_320 0.0947659154 - - Stem-specific protein TSJT1, putative [Ricinus communis]
17 Hb_028396_010 0.0950322008 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
18 Hb_000261_160 0.095292589 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
19 Hb_000638_170 0.0953323247 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
20 Hb_000805_240 0.0964134335 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000826_100 Hb_000826_100 Hb_003605_160 Hb_003605_160 Hb_000826_100--Hb_003605_160 Hb_000189_240 Hb_000189_240 Hb_000826_100--Hb_000189_240 Hb_007441_330 Hb_007441_330 Hb_000826_100--Hb_007441_330 Hb_008071_020 Hb_008071_020 Hb_000826_100--Hb_008071_020 Hb_026314_020 Hb_026314_020 Hb_000826_100--Hb_026314_020 Hb_026053_020 Hb_026053_020 Hb_000826_100--Hb_026053_020 Hb_003605_160--Hb_000189_240 Hb_002303_060 Hb_002303_060 Hb_003605_160--Hb_002303_060 Hb_002000_140 Hb_002000_140 Hb_003605_160--Hb_002000_140 Hb_003605_160--Hb_008071_020 Hb_001329_150 Hb_001329_150 Hb_003605_160--Hb_001329_150 Hb_000189_240--Hb_026053_020 Hb_000189_240--Hb_002000_140 Hb_000189_240--Hb_002303_060 Hb_000189_240--Hb_008071_020 Hb_000996_140 Hb_000996_140 Hb_007441_330--Hb_000996_140 Hb_007441_330--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_007441_330--Hb_010175_040 Hb_000103_320 Hb_000103_320 Hb_007441_330--Hb_000103_320 Hb_007441_330--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_005278_020 Hb_005278_020 Hb_026314_020--Hb_005278_020 Hb_002343_060 Hb_002343_060 Hb_026314_020--Hb_002343_060 Hb_000005_090 Hb_000005_090 Hb_026314_020--Hb_000005_090 Hb_019762_020 Hb_019762_020 Hb_026314_020--Hb_019762_020 Hb_001318_250 Hb_001318_250 Hb_026314_020--Hb_001318_250 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_026053_020--Hb_000996_140 Hb_018133_020 Hb_018133_020 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7899 6.08067 18.8346 29.373 9.9541 12.6043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4779 44.5535 22.1223 9.84354 10.8907

CAGE analysis