Hb_000827_020

Information

Type -
Description -
Location Contig827: 11324-25829
Sequence    

Annotation

kegg
ID vvi:100245499
description uncharacterized LOC100245499
nr
ID CDP04746.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A068U8F2
description Coffea canephora DH200=94 genomic scaffold, scaffold_13 OS=Coffea canephora GN=GSCOC_T00018830001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59730: 14243-15518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000827_020 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_003399_110 0.0691197852 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000012_350 0.0813757033 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
4 Hb_000964_040 0.0948623587 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
5 Hb_001408_080 0.1006573259 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
6 Hb_012132_050 0.1020121124 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
7 Hb_009785_030 0.1028287966 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
8 Hb_001427_100 0.1035551725 - - acc synthase, putative [Ricinus communis]
9 Hb_004607_060 0.103861335 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
10 Hb_009783_010 0.1100636343 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
11 Hb_010164_030 0.1125315533 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
12 Hb_007904_280 0.1132459067 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
13 Hb_000849_030 0.1141487506 - - PREDICTED: fimbrin-2 [Jatropha curcas]
14 Hb_036520_030 0.1156583796 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
15 Hb_011574_020 0.1184918883 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
16 Hb_002890_330 0.118989404 - - caspase, putative [Ricinus communis]
17 Hb_002053_190 0.119442094 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
18 Hb_001541_210 0.119772552 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
19 Hb_007101_070 0.1212223284 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
20 Hb_005741_030 0.1217840301 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]

Gene co-expression network

sample Hb_000827_020 Hb_000827_020 Hb_003399_110 Hb_003399_110 Hb_000827_020--Hb_003399_110 Hb_000012_350 Hb_000012_350 Hb_000827_020--Hb_000012_350 Hb_000964_040 Hb_000964_040 Hb_000827_020--Hb_000964_040 Hb_001408_080 Hb_001408_080 Hb_000827_020--Hb_001408_080 Hb_012132_050 Hb_012132_050 Hb_000827_020--Hb_012132_050 Hb_009785_030 Hb_009785_030 Hb_000827_020--Hb_009785_030 Hb_007101_070 Hb_007101_070 Hb_003399_110--Hb_007101_070 Hb_001541_210 Hb_001541_210 Hb_003399_110--Hb_001541_210 Hb_002890_330 Hb_002890_330 Hb_003399_110--Hb_002890_330 Hb_000358_060 Hb_000358_060 Hb_003399_110--Hb_000358_060 Hb_001936_120 Hb_001936_120 Hb_003399_110--Hb_001936_120 Hb_001794_040 Hb_001794_040 Hb_000012_350--Hb_001794_040 Hb_011574_020 Hb_011574_020 Hb_000012_350--Hb_011574_020 Hb_010164_030 Hb_010164_030 Hb_000012_350--Hb_010164_030 Hb_020738_010 Hb_020738_010 Hb_000012_350--Hb_020738_010 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_150299_010 Hb_150299_010 Hb_000964_040--Hb_150299_010 Hb_007122_020 Hb_007122_020 Hb_000964_040--Hb_007122_020 Hb_009783_010 Hb_009783_010 Hb_000964_040--Hb_009783_010 Hb_001789_230 Hb_001789_230 Hb_000964_040--Hb_001789_230 Hb_000964_040--Hb_012132_050 Hb_004607_060 Hb_004607_060 Hb_000964_040--Hb_004607_060 Hb_001110_060 Hb_001110_060 Hb_001408_080--Hb_001110_060 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001408_080--Hb_001427_100 Hb_005111_020 Hb_005111_020 Hb_001408_080--Hb_005111_020 Hb_001408_080--Hb_012132_050 Hb_036520_030 Hb_036520_030 Hb_001408_080--Hb_036520_030 Hb_007904_280 Hb_007904_280 Hb_012132_050--Hb_007904_280 Hb_012132_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_012132_050--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_012132_050--Hb_001136_160 Hb_003466_010 Hb_003466_010 Hb_012132_050--Hb_003466_010 Hb_000345_550 Hb_000345_550 Hb_009785_030--Hb_000345_550 Hb_009785_030--Hb_009783_010 Hb_009785_030--Hb_000012_350 Hb_002874_200 Hb_002874_200 Hb_009785_030--Hb_002874_200 Hb_009785_030--Hb_007904_280 Hb_009785_030--Hb_012132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0516124 0.0934046 0.233161 0.00920618 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00671394 0.090823

CAGE analysis