Hb_000827_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig827: 103832-107453
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09760g
description hypothetical protein
nr
ID XP_012076887.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID U5FEN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59733: 98896-103559 , PASA_asmbl_59736: 105912-106163 , PASA_asmbl_59737: 106313-106567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000827_070 0.0 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_005188_050 0.0430745171 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
3 Hb_045793_010 0.05735589 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
4 Hb_000487_290 0.0628080812 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
5 Hb_002477_030 0.063159166 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
6 Hb_120327_010 0.0633001245 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
7 Hb_001736_040 0.066974224 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
8 Hb_006316_040 0.0675707004 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
9 Hb_000453_170 0.071265189 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001595_030 0.0720614376 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
11 Hb_000502_050 0.0721234119 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
12 Hb_007416_180 0.0736840327 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
13 Hb_002477_280 0.0742802623 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
14 Hb_005731_030 0.0747113093 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
15 Hb_004724_060 0.0755483192 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
16 Hb_004221_020 0.0756334433 - - protein binding protein, putative [Ricinus communis]
17 Hb_000977_070 0.0767201247 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
18 Hb_123352_020 0.0767704054 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
19 Hb_000025_360 0.0770995186 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_007054_060 0.077675985 - - -

Gene co-expression network

sample Hb_000827_070 Hb_000827_070 Hb_005188_050 Hb_005188_050 Hb_000827_070--Hb_005188_050 Hb_045793_010 Hb_045793_010 Hb_000827_070--Hb_045793_010 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_002477_030 Hb_002477_030 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001736_040 Hb_001736_040 Hb_000827_070--Hb_001736_040 Hb_005188_050--Hb_000487_290 Hb_002603_120 Hb_002603_120 Hb_005188_050--Hb_002603_120 Hb_000803_190 Hb_000803_190 Hb_005188_050--Hb_000803_190 Hb_005188_050--Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_005188_050--Hb_000025_360 Hb_045793_010--Hb_000025_360 Hb_076693_020 Hb_076693_020 Hb_045793_010--Hb_076693_020 Hb_006847_040 Hb_006847_040 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_123352_020 Hb_123352_020 Hb_000487_290--Hb_123352_020 Hb_005731_030 Hb_005731_030 Hb_000487_290--Hb_005731_030 Hb_000487_290--Hb_000025_360 Hb_004724_060 Hb_004724_060 Hb_000487_290--Hb_004724_060 Hb_002477_030--Hb_001736_040 Hb_181235_010 Hb_181235_010 Hb_002477_030--Hb_181235_010 Hb_000030_040 Hb_000030_040 Hb_002477_030--Hb_000030_040 Hb_001797_050 Hb_001797_050 Hb_002477_030--Hb_001797_050 Hb_002477_030--Hb_005188_050 Hb_007254_070 Hb_007254_070 Hb_120327_010--Hb_007254_070 Hb_044728_010 Hb_044728_010 Hb_120327_010--Hb_044728_010 Hb_004800_080 Hb_004800_080 Hb_120327_010--Hb_004800_080 Hb_000225_040 Hb_000225_040 Hb_120327_010--Hb_000225_040 Hb_000107_330 Hb_000107_330 Hb_120327_010--Hb_000107_330 Hb_000661_050 Hb_000661_050 Hb_001736_040--Hb_000661_050 Hb_000317_020 Hb_000317_020 Hb_001736_040--Hb_000317_020 Hb_000152_820 Hb_000152_820 Hb_001736_040--Hb_000152_820 Hb_000977_070 Hb_000977_070 Hb_001736_040--Hb_000977_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96526 2.70499 1.09726 1.0433 3.05366 3.28619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92837 2.74023 2.52869 1.8485 1.5385

CAGE analysis