Hb_000828_040

Information

Type -
Description -
Location Contig828: 72359-73606
Sequence    

Annotation

kegg
ID vvi:100242499
description secoisolariciresinol dehydrogenase-like
nr
ID XP_012074376.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL8
description Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1
trembl
ID A0A067KIW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08810 PE=3 SV=1
Gene Ontology
ID GO:0016491
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59750: 72545-73042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000828_040 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_000009_620 0.1828013012 - - zinc finger protein, putative [Ricinus communis]
3 Hb_001507_100 0.200868492 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000640_300 0.2162054951 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
5 Hb_003160_020 0.231854327 - - PREDICTED: uncharacterized protein LOC105639457 [Jatropha curcas]
6 Hb_028872_060 0.235700803 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
7 Hb_001150_040 0.2364289102 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
8 Hb_000061_040 0.2400847243 - - PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
9 Hb_003978_010 0.2430162694 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_007451_020 0.2432916092 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
11 Hb_056506_060 0.243940298 - - hypothetical protein B456_007G294000 [Gossypium raimondii]
12 Hb_003929_060 0.2486076419 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
13 Hb_134894_010 0.2489047463 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
14 Hb_003312_010 0.2503870138 - - PREDICTED: uncharacterized protein LOC104428797 [Eucalyptus grandis]
15 Hb_027445_050 0.2512551629 - - PREDICTED: titin isoform X13 [Jatropha curcas]
16 Hb_002407_080 0.2526008851 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
17 Hb_006586_030 0.2529728864 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
18 Hb_004883_060 0.2571030981 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
19 Hb_002273_060 0.2586573715 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004242_190 0.2596033558 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000828_040 Hb_000828_040 Hb_000009_620 Hb_000009_620 Hb_000828_040--Hb_000009_620 Hb_001507_100 Hb_001507_100 Hb_000828_040--Hb_001507_100 Hb_000640_300 Hb_000640_300 Hb_000828_040--Hb_000640_300 Hb_003160_020 Hb_003160_020 Hb_000828_040--Hb_003160_020 Hb_028872_060 Hb_028872_060 Hb_000828_040--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000828_040--Hb_001150_040 Hb_001856_010 Hb_001856_010 Hb_000009_620--Hb_001856_010 Hb_000009_620--Hb_028872_060 Hb_002407_080 Hb_002407_080 Hb_000009_620--Hb_002407_080 Hb_004342_030 Hb_004342_030 Hb_000009_620--Hb_004342_030 Hb_114310_040 Hb_114310_040 Hb_000009_620--Hb_114310_040 Hb_001507_100--Hb_003160_020 Hb_001104_240 Hb_001104_240 Hb_001507_100--Hb_001104_240 Hb_089497_010 Hb_089497_010 Hb_001507_100--Hb_089497_010 Hb_138585_110 Hb_138585_110 Hb_001507_100--Hb_138585_110 Hb_004242_190 Hb_004242_190 Hb_001507_100--Hb_004242_190 Hb_112023_010 Hb_112023_010 Hb_001507_100--Hb_112023_010 Hb_000589_400 Hb_000589_400 Hb_000640_300--Hb_000589_400 Hb_000243_140 Hb_000243_140 Hb_000640_300--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_000640_300--Hb_007451_020 Hb_000640_300--Hb_028872_060 Hb_000640_300--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_000640_300--Hb_004230_040 Hb_003160_020--Hb_004242_190 Hb_003160_020--Hb_001104_240 Hb_002972_020 Hb_002972_020 Hb_003160_020--Hb_002972_020 Hb_002028_220 Hb_002028_220 Hb_003160_020--Hb_002028_220 Hb_003160_020--Hb_028872_060 Hb_028872_060--Hb_001150_040 Hb_028872_060--Hb_004242_190 Hb_028872_060--Hb_004230_040 Hb_155123_010 Hb_155123_010 Hb_028872_060--Hb_155123_010 Hb_004738_020 Hb_004738_020 Hb_001150_040--Hb_004738_020 Hb_000203_180 Hb_000203_180 Hb_001150_040--Hb_000203_180 Hb_004225_180 Hb_004225_180 Hb_001150_040--Hb_004225_180 Hb_012052_060 Hb_012052_060 Hb_001150_040--Hb_012052_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7926 13.4881 0.0418259 0.546507 10.9651 25.5394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5641 10.1326 4.85769 46.5679 0

CAGE analysis