Hb_000828_050

Information

Type -
Description -
Location Contig828: 75527-79587
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07490g
description POPTRDRAFT_576543; putative short-chain alcohol dehydrogenase family protein
nr
ID CBI28275.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A067KIW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08815 PE=4 SV=1
Gene Ontology
ID GO:0016491
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59751: 77859-79598
cDNA
(Sanger)
(ID:Location)		 043_O11.ab1: 78214-79596

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000828_050 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_004136_030 0.1690415707 - - -
3 Hb_000172_190 0.1692959165 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
4 Hb_000252_110 0.1751191763 - - -
5 Hb_007199_010 0.1900900705 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
6 Hb_001621_010 0.2041691246 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
7 Hb_015690_010 0.2156104112 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g038521mg [Citrus sinensis]
8 Hb_001171_050 0.2198321042 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
9 Hb_004453_080 0.220154762 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
10 Hb_017170_030 0.2226718512 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
11 Hb_001433_110 0.2246881816 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
12 Hb_000345_250 0.2252251502 - - cullin 1-like protein [Hevea brasiliensis]
13 Hb_001366_070 0.2260193017 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
14 Hb_000061_090 0.226723708 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
15 Hb_002042_080 0.2309583475 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
16 Hb_028487_170 0.2334557109 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
17 Hb_004897_010 0.2338870862 - - -
18 Hb_000031_260 0.2351280531 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
19 Hb_001059_120 0.2373409553 - - NADH dehydrogenase, putative [Ricinus communis]
20 Hb_003947_040 0.2386394332 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000828_050 Hb_000828_050 Hb_004136_030 Hb_004136_030 Hb_000828_050--Hb_004136_030 Hb_000172_190 Hb_000172_190 Hb_000828_050--Hb_000172_190 Hb_000252_110 Hb_000252_110 Hb_000828_050--Hb_000252_110 Hb_007199_010 Hb_007199_010 Hb_000828_050--Hb_007199_010 Hb_001621_010 Hb_001621_010 Hb_000828_050--Hb_001621_010 Hb_015690_010 Hb_015690_010 Hb_000828_050--Hb_015690_010 Hb_004136_030--Hb_000252_110 Hb_004453_080 Hb_004453_080 Hb_004136_030--Hb_004453_080 Hb_001366_070 Hb_001366_070 Hb_004136_030--Hb_001366_070 Hb_001433_110 Hb_001433_110 Hb_004136_030--Hb_001433_110 Hb_002374_380 Hb_002374_380 Hb_004136_030--Hb_002374_380 Hb_010815_020 Hb_010815_020 Hb_000172_190--Hb_010815_020 Hb_000031_260 Hb_000031_260 Hb_000172_190--Hb_000031_260 Hb_003947_040 Hb_003947_040 Hb_000172_190--Hb_003947_040 Hb_000345_250 Hb_000345_250 Hb_000172_190--Hb_000345_250 Hb_004897_010 Hb_004897_010 Hb_000172_190--Hb_004897_010 Hb_000252_110--Hb_004453_080 Hb_005656_100 Hb_005656_100 Hb_000252_110--Hb_005656_100 Hb_000041_240 Hb_000041_240 Hb_000252_110--Hb_000041_240 Hb_004931_100 Hb_004931_100 Hb_000252_110--Hb_004931_100 Hb_001171_050 Hb_001171_050 Hb_000252_110--Hb_001171_050 Hb_000252_110--Hb_001433_110 Hb_000061_090 Hb_000061_090 Hb_007199_010--Hb_000061_090 Hb_002291_010 Hb_002291_010 Hb_007199_010--Hb_002291_010 Hb_007181_020 Hb_007181_020 Hb_007199_010--Hb_007181_020 Hb_054467_010 Hb_054467_010 Hb_007199_010--Hb_054467_010 Hb_002774_110 Hb_002774_110 Hb_007199_010--Hb_002774_110 Hb_000139_340 Hb_000139_340 Hb_001621_010--Hb_000139_340 Hb_073171_100 Hb_073171_100 Hb_001621_010--Hb_073171_100 Hb_027380_200 Hb_027380_200 Hb_001621_010--Hb_027380_200 Hb_001621_010--Hb_000172_190 Hb_012317_020 Hb_012317_020 Hb_001621_010--Hb_012317_020 Hb_001621_010--Hb_004453_080 Hb_001486_030 Hb_001486_030 Hb_015690_010--Hb_001486_030 Hb_108329_020 Hb_108329_020 Hb_015690_010--Hb_108329_020 Hb_043485_010 Hb_043485_010 Hb_015690_010--Hb_043485_010 Hb_083820_010 Hb_083820_010 Hb_015690_010--Hb_083820_010 Hb_000227_070 Hb_000227_070 Hb_015690_010--Hb_000227_070 Hb_001246_030 Hb_001246_030 Hb_015690_010--Hb_001246_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03478 9.07591 2.55113 9.19139 0.335987 0.225534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3655 27.1776 17.6187 37.5561 23.3737

CAGE analysis