Hb_000832_010

Information

Type -
Description -
Location Contig832: 5929-10715
Sequence    

Annotation

kegg
ID sbi:SORBI_01g025335
description SORBIDRAFT_01g025335, Sb01g025335; hypothetical protein
nr
ID CAN71189.1
description hypothetical protein VITISV_005044 [Vitis vinifera]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID A5AEG4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005044 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_010 0.0 - - hypothetical protein VITISV_005044 [Vitis vinifera]
2 Hb_001871_030 0.1378100339 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006274_020 0.1633063805 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_002729_020 0.1756697997 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
5 Hb_005765_020 0.1854223853 - - -
6 Hb_019641_020 0.1905285808 - - hypothetical protein AALP_AAs49670U000100, partial [Arabis alpina]
7 Hb_072173_010 0.2077367807 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
8 Hb_006013_030 0.2079177506 - - -
9 Hb_032299_070 0.2091446243 - - -
10 Hb_002733_050 0.2100597252 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_012538_010 0.2124909244 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_010812_140 0.2133144706 - - protein binding protein, putative [Ricinus communis]
13 Hb_001619_010 0.21413215 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
14 Hb_000959_370 0.216511538 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_058095_030 0.2178769707 - - -
16 Hb_006992_030 0.2181733085 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
17 Hb_114121_010 0.2187224594 - - -
18 Hb_003927_020 0.2210636359 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
19 Hb_001711_040 0.2260555595 - - conserved hypothetical protein [Ricinus communis]
20 Hb_020400_010 0.2265086372 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_010 Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_000832_010--Hb_001871_030 Hb_006274_020 Hb_006274_020 Hb_000832_010--Hb_006274_020 Hb_002729_020 Hb_002729_020 Hb_000832_010--Hb_002729_020 Hb_005765_020 Hb_005765_020 Hb_000832_010--Hb_005765_020 Hb_019641_020 Hb_019641_020 Hb_000832_010--Hb_019641_020 Hb_072173_010 Hb_072173_010 Hb_000832_010--Hb_072173_010 Hb_003927_020 Hb_003927_020 Hb_001871_030--Hb_003927_020 Hb_000167_070 Hb_000167_070 Hb_001871_030--Hb_000167_070 Hb_006992_030 Hb_006992_030 Hb_001871_030--Hb_006992_030 Hb_001871_030--Hb_005765_020 Hb_007885_110 Hb_007885_110 Hb_001871_030--Hb_007885_110 Hb_002733_050 Hb_002733_050 Hb_006274_020--Hb_002733_050 Hb_006274_020--Hb_019641_020 Hb_020400_010 Hb_020400_010 Hb_006274_020--Hb_020400_010 Hb_012538_010 Hb_012538_010 Hb_006274_020--Hb_012538_010 Hb_114121_010 Hb_114121_010 Hb_006274_020--Hb_114121_010 Hb_006013_030 Hb_006013_030 Hb_006274_020--Hb_006013_030 Hb_005016_110 Hb_005016_110 Hb_002729_020--Hb_005016_110 Hb_002729_020--Hb_001871_030 Hb_000136_080 Hb_000136_080 Hb_002729_020--Hb_000136_080 Hb_002815_040 Hb_002815_040 Hb_002729_020--Hb_002815_040 Hb_002729_020--Hb_114121_010 Hb_005765_020--Hb_006992_030 Hb_058095_030 Hb_058095_030 Hb_005765_020--Hb_058095_030 Hb_000028_270 Hb_000028_270 Hb_005765_020--Hb_000028_270 Hb_002585_060 Hb_002585_060 Hb_005765_020--Hb_002585_060 Hb_005765_020--Hb_003927_020 Hb_032299_070 Hb_032299_070 Hb_005765_020--Hb_032299_070 Hb_044313_010 Hb_044313_010 Hb_019641_020--Hb_044313_010 Hb_000959_370 Hb_000959_370 Hb_019641_020--Hb_000959_370 Hb_019641_020--Hb_006013_030 Hb_019641_020--Hb_032299_070 Hb_019641_020--Hb_012538_010 Hb_000600_080 Hb_000600_080 Hb_072173_010--Hb_000600_080 Hb_000101_320 Hb_000101_320 Hb_072173_010--Hb_000101_320 Hb_000685_140 Hb_000685_140 Hb_072173_010--Hb_000685_140 Hb_008834_010 Hb_008834_010 Hb_072173_010--Hb_008834_010 Hb_072173_010--Hb_002733_050 Hb_072173_010--Hb_114121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0107414 0.10296 0.0163833 0 0 0.0188085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.168319 0.243147

CAGE analysis