Hb_000832_020

Information

Type transcription factor
Description TF Family: B3
Location Contig832: 13166-19088
Sequence    

Annotation

kegg
ID egr:104452869
description B3 domain-containing protein REM13-like
nr
ID KCW75883.1
description hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID A0A059CBR1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00268 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59827: 16327-19021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_020 0.0 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
2 Hb_002217_300 0.0541289549 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
3 Hb_000032_100 0.0697300181 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
4 Hb_000707_050 0.0754170117 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
5 Hb_000739_310 0.0755352674 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
6 Hb_002311_040 0.079349211 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
7 Hb_000796_220 0.0812452711 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
8 Hb_002942_100 0.0827134708 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
9 Hb_000723_130 0.0833885646 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
10 Hb_000898_040 0.0844147762 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_005054_100 0.085279678 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
12 Hb_028089_010 0.0876662115 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
13 Hb_001675_180 0.0888515683 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
14 Hb_002740_180 0.0894943406 - - conserved hypothetical protein [Ricinus communis]
15 Hb_015175_020 0.0940298686 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
16 Hb_089032_040 0.094775103 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
17 Hb_005489_110 0.0950293856 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
18 Hb_000185_040 0.0984090669 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
19 Hb_002811_060 0.0998043442 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
20 Hb_001507_020 0.0998109826 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_020 Hb_000832_020 Hb_002217_300 Hb_002217_300 Hb_000832_020--Hb_002217_300 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_000707_050 Hb_000707_050 Hb_000832_020--Hb_000707_050 Hb_000739_310 Hb_000739_310 Hb_000832_020--Hb_000739_310 Hb_002311_040 Hb_002311_040 Hb_000832_020--Hb_002311_040 Hb_000796_220 Hb_000796_220 Hb_000832_020--Hb_000796_220 Hb_089032_040 Hb_089032_040 Hb_002217_300--Hb_089032_040 Hb_000898_040 Hb_000898_040 Hb_002217_300--Hb_000898_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_019654_190 Hb_019654_190 Hb_000032_100--Hb_019654_190 Hb_028089_010 Hb_028089_010 Hb_000032_100--Hb_028089_010 Hb_000723_130 Hb_000723_130 Hb_000032_100--Hb_000723_130 Hb_000032_100--Hb_002311_040 Hb_090804_010 Hb_090804_010 Hb_000032_100--Hb_090804_010 Hb_000707_050--Hb_000739_310 Hb_086639_040 Hb_086639_040 Hb_000707_050--Hb_086639_040 Hb_000574_390 Hb_000574_390 Hb_000707_050--Hb_000574_390 Hb_006711_100 Hb_006711_100 Hb_000707_050--Hb_006711_100 Hb_013405_030 Hb_013405_030 Hb_000707_050--Hb_013405_030 Hb_007545_030 Hb_007545_030 Hb_000739_310--Hb_007545_030 Hb_024570_010 Hb_024570_010 Hb_000739_310--Hb_024570_010 Hb_000796_040 Hb_000796_040 Hb_000739_310--Hb_000796_040 Hb_001019_190 Hb_001019_190 Hb_000739_310--Hb_001019_190 Hb_002311_040--Hb_000723_130 Hb_002942_100 Hb_002942_100 Hb_002311_040--Hb_002942_100 Hb_004684_010 Hb_004684_010 Hb_002311_040--Hb_004684_010 Hb_009486_200 Hb_009486_200 Hb_002311_040--Hb_009486_200 Hb_008500_010 Hb_008500_010 Hb_002311_040--Hb_008500_010 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100 Hb_000808_230 Hb_000808_230 Hb_000796_220--Hb_000808_230 Hb_004109_090 Hb_004109_090 Hb_000796_220--Hb_004109_090 Hb_000170_210 Hb_000170_210 Hb_000796_220--Hb_000170_210 Hb_001675_180 Hb_001675_180 Hb_000796_220--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000796_220--Hb_085781_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92331 2.7426 2.03525 3.15051 5.46335 7.0688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54784 3.75587 9.21142 4.17252 4.30979

CAGE analysis