Hb_000832_130

Information

Type -
Description -
Location Contig832: 90101-93129
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05220g
description POPTRDRAFT_765419; hypothetical protein
nr
ID XP_012081565.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
swissprot
ID O80647
description Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1
trembl
ID B9HME5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05220g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59831: 90006-90506 , PASA_asmbl_59832: 92171-92665 , PASA_asmbl_59833: 92751-93077 , PASA_asmbl_59834: 93964-94658
cDNA
(Sanger)
(ID:Location)		 016_F23.ab1: 93967-94604 , 019_P21.ab1: 93964-94604 , 020_F20.ab1: 93963-94604

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_130 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
2 Hb_000951_110 0.0738655561 - - heat shock protein, putative [Ricinus communis]
3 Hb_004718_010 0.0812342439 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
4 Hb_010578_060 0.0860162837 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
5 Hb_064903_010 0.0883593116 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
6 Hb_002471_210 0.0929384482 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
7 Hb_111985_080 0.0993685878 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
8 Hb_126643_010 0.0998528057 - - Protein transport protein Sec24C, putative [Ricinus communis]
9 Hb_002150_030 0.1003854636 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
10 Hb_007108_030 0.1010529689 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000768_190 0.1022645197 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_116929_010 0.1030868284 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
13 Hb_000009_210 0.103529265 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
14 Hb_000072_350 0.1057830056 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
15 Hb_003544_100 0.1073561212 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
16 Hb_048476_170 0.1081277326 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
17 Hb_006649_060 0.1083611338 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001080_270 0.1088981009 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
19 Hb_002301_080 0.1109619611 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
20 Hb_000529_260 0.1109697974 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_130 Hb_000832_130 Hb_000951_110 Hb_000951_110 Hb_000832_130--Hb_000951_110 Hb_004718_010 Hb_004718_010 Hb_000832_130--Hb_004718_010 Hb_010578_060 Hb_010578_060 Hb_000832_130--Hb_010578_060 Hb_064903_010 Hb_064903_010 Hb_000832_130--Hb_064903_010 Hb_002471_210 Hb_002471_210 Hb_000832_130--Hb_002471_210 Hb_111985_080 Hb_111985_080 Hb_000832_130--Hb_111985_080 Hb_020665_030 Hb_020665_030 Hb_000951_110--Hb_020665_030 Hb_000671_110 Hb_000671_110 Hb_000951_110--Hb_000671_110 Hb_000951_110--Hb_002471_210 Hb_002301_260 Hb_002301_260 Hb_000951_110--Hb_002301_260 Hb_007108_030 Hb_007108_030 Hb_000951_110--Hb_007108_030 Hb_004718_010--Hb_010578_060 Hb_000959_040 Hb_000959_040 Hb_004718_010--Hb_000959_040 Hb_001268_350 Hb_001268_350 Hb_004718_010--Hb_001268_350 Hb_004543_030 Hb_004543_030 Hb_004718_010--Hb_004543_030 Hb_002301_080 Hb_002301_080 Hb_004718_010--Hb_002301_080 Hb_001080_270 Hb_001080_270 Hb_004718_010--Hb_001080_270 Hb_010578_060--Hb_000959_040 Hb_183963_030 Hb_183963_030 Hb_010578_060--Hb_183963_030 Hb_002188_110 Hb_002188_110 Hb_010578_060--Hb_002188_110 Hb_001247_070 Hb_001247_070 Hb_010578_060--Hb_001247_070 Hb_010578_060--Hb_004543_030 Hb_000768_190 Hb_000768_190 Hb_064903_010--Hb_000768_190 Hb_064903_010--Hb_111985_080 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_003044_020 Hb_003044_020 Hb_064903_010--Hb_003044_020 Hb_007849_020 Hb_007849_020 Hb_002471_210--Hb_007849_020 Hb_002291_070 Hb_002291_070 Hb_002471_210--Hb_002291_070 Hb_000475_020 Hb_000475_020 Hb_002471_210--Hb_000475_020 Hb_001811_120 Hb_001811_120 Hb_002471_210--Hb_001811_120 Hb_000250_070 Hb_000250_070 Hb_002471_210--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002471_210--Hb_001322_210 Hb_133047_010 Hb_133047_010 Hb_111985_080--Hb_133047_010 Hb_148909_030 Hb_148909_030 Hb_111985_080--Hb_148909_030 Hb_111985_080--Hb_002301_080 Hb_030627_060 Hb_030627_060 Hb_111985_080--Hb_030627_060 Hb_111985_080--Hb_004718_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.625181 0.811048 0.235182 0.242839 1.4762 1.30884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278898 0.394969 0.661973 0.603578 0.553014

CAGE analysis