Hb_000832_140

Information

Type -
Description -
Location Contig832: 93947-97140
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05210g
description POPTRDRAFT_820324; hypothetical protein
nr
ID ADV04049.1
description actin depolymerizing factor 4 [Hevea brasiliensis]
swissprot
ID Q9FVI2
description Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1
trembl
ID F8RW91
description Actin depolymerizing factor 4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59834: 93964-94658
cDNA
(Sanger)
(ID:Location)		 016_F23.ab1: 93967-94604 , 019_P21.ab1: 93964-94604 , 020_F20.ab1: 93963-94604

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_140 0.0 - - actin depolymerizing factor 4 [Hevea brasiliensis]
2 Hb_000174_090 0.0529087511 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
3 Hb_002214_040 0.0537543534 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_003050_080 0.0554756231 - - 40S ribosomal protein S14, putative [Ricinus communis]
5 Hb_000103_560 0.0571228559 - - ADP-ribosylation factor, putative [Ricinus communis]
6 Hb_063716_050 0.0573315293 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
7 Hb_000529_190 0.0615379156 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
8 Hb_008878_030 0.0635890587 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
9 Hb_010436_070 0.0639021302 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
10 Hb_000926_250 0.0652875837 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
11 Hb_001477_110 0.0663645418 - - prohibitin, putative [Ricinus communis]
12 Hb_001604_080 0.0672062987 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
13 Hb_001811_050 0.0678372071 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
14 Hb_000815_040 0.0687993229 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
15 Hb_000494_020 0.0726023888 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
16 Hb_002449_020 0.0727452472 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
17 Hb_002890_140 0.0743185908 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
18 Hb_000007_100 0.0744320355 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
19 Hb_125000_010 0.0757512011 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
20 Hb_001184_090 0.0764145626 - - PREDICTED: TIP41-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000832_140 Hb_000832_140 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_003050_080 Hb_003050_080 Hb_000832_140--Hb_003050_080 Hb_000103_560 Hb_000103_560 Hb_000832_140--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_000832_140--Hb_063716_050 Hb_000529_190 Hb_000529_190 Hb_000832_140--Hb_000529_190 Hb_002449_020 Hb_002449_020 Hb_000174_090--Hb_002449_020 Hb_000926_250 Hb_000926_250 Hb_000174_090--Hb_000926_250 Hb_002078_150 Hb_002078_150 Hb_000174_090--Hb_002078_150 Hb_001477_110 Hb_001477_110 Hb_000174_090--Hb_001477_110 Hb_033834_040 Hb_033834_040 Hb_000174_090--Hb_033834_040 Hb_002214_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_003050_080--Hb_063716_050 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_001489_060 Hb_001489_060 Hb_003050_080--Hb_001489_060 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_000056_200 Hb_000056_200 Hb_003050_080--Hb_000056_200 Hb_000103_560--Hb_063716_050 Hb_001604_080 Hb_001604_080 Hb_000103_560--Hb_001604_080 Hb_000103_560--Hb_000815_040 Hb_000103_560--Hb_002078_150 Hb_000103_560--Hb_000529_190 Hb_063716_050--Hb_001489_060 Hb_063716_050--Hb_000529_190 Hb_063716_050--Hb_001604_080 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_000529_190--Hb_001604_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
442.328 94.9185 160.018 192.254 384.631 434.242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
451.995 628.091 371.437 254.136 124.666

CAGE analysis