Hb_000832_190

Information

Type -
Description -
Location Contig832: 109750-115102
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05160g
description POPTRDRAFT_656053; GTP-binding family protein
nr
ID AEA92307.1
description Rab3 [Hevea brasiliensis]
swissprot
ID P28186
description Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1
trembl
ID F2VXU5
description Rab3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description ras-related protein rabe1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59836: 112736-113078 , PASA_asmbl_59838: 113559-114359 , PASA_asmbl_59839: 112736-113288 , PASA_asmbl_59840: 109753-115102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_190 0.0 - - Rab3 [Hevea brasiliensis]
2 Hb_004984_030 0.0592645848 - - protein with unknown function [Ricinus communis]
3 Hb_000429_040 0.0841192198 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
4 Hb_004041_020 0.0871941412 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
5 Hb_000926_200 0.0924878934 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
6 Hb_004965_110 0.0938116629 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
7 Hb_000413_240 0.0950386797 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
8 Hb_000062_330 0.0958200314 - - unknown [Lotus japonicus]
9 Hb_000392_340 0.0965420449 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
10 Hb_000599_260 0.0966535537 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
11 Hb_032202_100 0.0975663098 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
12 Hb_005167_010 0.0993283692 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
13 Hb_001377_450 0.0997070529 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
14 Hb_000733_200 0.0997668579 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
15 Hb_003207_180 0.1006971376 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
16 Hb_000300_260 0.101020704 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
17 Hb_001511_260 0.1011263965 - - tryptophan biosynthesis protein, putative [Ricinus communis]
18 Hb_006326_040 0.1012896083 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000946_090 0.1016248526 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
20 Hb_001195_060 0.1021387634 - - Protein yrdA, putative [Ricinus communis]

Gene co-expression network

sample Hb_000832_190 Hb_000832_190 Hb_004984_030 Hb_004984_030 Hb_000832_190--Hb_004984_030 Hb_000429_040 Hb_000429_040 Hb_000832_190--Hb_000429_040 Hb_004041_020 Hb_004041_020 Hb_000832_190--Hb_004041_020 Hb_000926_200 Hb_000926_200 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000413_240 Hb_000413_240 Hb_000832_190--Hb_000413_240 Hb_002028_090 Hb_002028_090 Hb_004984_030--Hb_002028_090 Hb_004984_030--Hb_000926_200 Hb_000946_090 Hb_000946_090 Hb_004984_030--Hb_000946_090 Hb_040819_010 Hb_040819_010 Hb_004984_030--Hb_040819_010 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060 Hb_000429_040--Hb_004041_020 Hb_001377_450 Hb_001377_450 Hb_000429_040--Hb_001377_450 Hb_000429_040--Hb_000413_240 Hb_000163_100 Hb_000163_100 Hb_000429_040--Hb_000163_100 Hb_000429_040--Hb_004984_030 Hb_002946_190 Hb_002946_190 Hb_004041_020--Hb_002946_190 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_004041_020--Hb_012565_070 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_003266_030 Hb_003266_030 Hb_004965_110--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_004965_110--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_004965_110--Hb_011671_260 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_000926_080 Hb_000926_080 Hb_004965_110--Hb_000926_080 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140 Hb_000413_240--Hb_000163_100 Hb_000413_240--Hb_001863_380 Hb_000390_090 Hb_000390_090 Hb_000413_240--Hb_000390_090 Hb_000413_060 Hb_000413_060 Hb_000413_240--Hb_000413_060 Hb_000413_240--Hb_002946_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2535 15.4517 62.8786 49.6251 13.1739 19.8911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4185 51.9916 32.3094 20.0442 23.7692

CAGE analysis