Hb_000832_220

Information

Type -
Description -
Location Contig832: 145390-155238
Sequence    

Annotation

kegg
ID tcc:TCM_042835
description Uncharacterized protein isoform 1
nr
ID XP_012081552.1
description PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K150
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18432 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59846: 145481-154819 , PASA_asmbl_59848: 154848-155231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_220 0.0 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
2 Hb_015099_010 0.0613300991 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
3 Hb_003449_070 0.0758090763 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
4 Hb_117552_010 0.078881288 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000375_130 0.0798391965 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
6 Hb_000613_080 0.0872781125 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
7 Hb_174821_010 0.0901842728 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
8 Hb_000035_410 0.0911884788 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
9 Hb_003029_130 0.0913662393 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
10 Hb_000785_040 0.0923037709 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
11 Hb_000160_290 0.0929302308 - - unnamed protein product [Vitis vinifera]
12 Hb_007426_130 0.0934148499 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
13 Hb_003124_130 0.0938340933 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
14 Hb_005321_020 0.0938667567 - - splicing factor-related family protein [Populus trichocarpa]
15 Hb_004629_010 0.094367274 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
16 Hb_000922_370 0.0954355401 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
17 Hb_002235_160 0.095439317 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
18 Hb_000470_070 0.0967888413 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
19 Hb_000209_070 0.0980464519 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
20 Hb_009969_030 0.0991168823 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000832_220 Hb_000832_220 Hb_015099_010 Hb_015099_010 Hb_000832_220--Hb_015099_010 Hb_003449_070 Hb_003449_070 Hb_000832_220--Hb_003449_070 Hb_117552_010 Hb_117552_010 Hb_000832_220--Hb_117552_010 Hb_000375_130 Hb_000375_130 Hb_000832_220--Hb_000375_130 Hb_000613_080 Hb_000613_080 Hb_000832_220--Hb_000613_080 Hb_174821_010 Hb_174821_010 Hb_000832_220--Hb_174821_010 Hb_015099_010--Hb_000375_130 Hb_003029_130 Hb_003029_130 Hb_015099_010--Hb_003029_130 Hb_002392_030 Hb_002392_030 Hb_015099_010--Hb_002392_030 Hb_003124_130 Hb_003124_130 Hb_015099_010--Hb_003124_130 Hb_000209_070 Hb_000209_070 Hb_015099_010--Hb_000209_070 Hb_003449_070--Hb_000613_080 Hb_001617_060 Hb_001617_060 Hb_003449_070--Hb_001617_060 Hb_000088_130 Hb_000088_130 Hb_003449_070--Hb_000088_130 Hb_000922_370 Hb_000922_370 Hb_003449_070--Hb_000922_370 Hb_003449_070--Hb_174821_010 Hb_003656_180 Hb_003656_180 Hb_117552_010--Hb_003656_180 Hb_002301_080 Hb_002301_080 Hb_117552_010--Hb_002301_080 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_001493_040 Hb_001493_040 Hb_117552_010--Hb_001493_040 Hb_002400_240 Hb_002400_240 Hb_117552_010--Hb_002400_240 Hb_117552_010--Hb_000922_370 Hb_000375_130--Hb_000088_130 Hb_000375_130--Hb_002392_030 Hb_133047_010 Hb_133047_010 Hb_000375_130--Hb_133047_010 Hb_009112_010 Hb_009112_010 Hb_000375_130--Hb_009112_010 Hb_000375_130--Hb_174821_010 Hb_000613_080--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_000613_080--Hb_003966_030 Hb_000613_080--Hb_174821_010 Hb_003044_020 Hb_003044_020 Hb_000613_080--Hb_003044_020 Hb_000613_080--Hb_000922_370 Hb_000470_070 Hb_000470_070 Hb_174821_010--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_174821_010--Hb_002078_100 Hb_000648_100 Hb_000648_100 Hb_174821_010--Hb_000648_100 Hb_174821_010--Hb_001617_060 Hb_174821_010--Hb_003966_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2294 27.4703 15.2236 22.8356 28.4847 44.3151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.65312 4.9053 17.9987 22.9606 15.6807

CAGE analysis