Hb_000832_240

Information

Type -
Description -
Location Contig832: 220782-221241
Sequence    

Annotation

kegg
ID rcu:RCOM_0190620
description hypothetical protein
nr
ID XP_002531984.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T144
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0190620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_168737_010 0.1749395549 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000122_030 0.1791254349 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
4 Hb_121550_010 0.1885793209 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001057_050 0.1913129595 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
6 Hb_000001_040 0.1960413662 - - unnamed protein product [Coffea canephora]
7 Hb_005305_060 0.1978467676 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
8 Hb_008221_110 0.201085364 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
9 Hb_027472_030 0.2043550389 - - RNA helicase 36, partial [Manihot esculenta]
10 Hb_007574_060 0.2066696288 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
11 Hb_115919_010 0.2082367781 - - unknown [Lotus japonicus]
12 Hb_001310_070 0.2105765119 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
13 Hb_004586_450 0.2135874698 - - -
14 Hb_008442_010 0.2169336699 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
15 Hb_003581_010 0.2175021621 - - hypothetical protein VITISV_004687 [Vitis vinifera]
16 Hb_135403_010 0.2181499494 - - HEV1.1 [Hevea brasiliensis]
17 Hb_000347_510 0.219735772 - - actin binding protein, putative [Ricinus communis]
18 Hb_000127_090 0.2208624139 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004502_050 0.2213642947 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
20 Hb_004117_180 0.2225020043 - - -

Gene co-expression network

sample Hb_000832_240 Hb_000832_240 Hb_168737_010 Hb_168737_010 Hb_000832_240--Hb_168737_010 Hb_000122_030 Hb_000122_030 Hb_000832_240--Hb_000122_030 Hb_121550_010 Hb_121550_010 Hb_000832_240--Hb_121550_010 Hb_001057_050 Hb_001057_050 Hb_000832_240--Hb_001057_050 Hb_000001_040 Hb_000001_040 Hb_000832_240--Hb_000001_040 Hb_005305_060 Hb_005305_060 Hb_000832_240--Hb_005305_060 Hb_003581_010 Hb_003581_010 Hb_168737_010--Hb_003581_010 Hb_073559_010 Hb_073559_010 Hb_168737_010--Hb_073559_010 Hb_032225_020 Hb_032225_020 Hb_168737_010--Hb_032225_020 Hb_005731_140 Hb_005731_140 Hb_168737_010--Hb_005731_140 Hb_000265_130 Hb_000265_130 Hb_168737_010--Hb_000265_130 Hb_001310_070 Hb_001310_070 Hb_000122_030--Hb_001310_070 Hb_000122_030--Hb_001057_050 Hb_115919_010 Hb_115919_010 Hb_000122_030--Hb_115919_010 Hb_000003_350 Hb_000003_350 Hb_000122_030--Hb_000003_350 Hb_004117_180 Hb_004117_180 Hb_000122_030--Hb_004117_180 Hb_000122_030--Hb_005305_060 Hb_000025_100 Hb_000025_100 Hb_121550_010--Hb_000025_100 Hb_147123_010 Hb_147123_010 Hb_121550_010--Hb_147123_010 Hb_008442_010 Hb_008442_010 Hb_121550_010--Hb_008442_010 Hb_121550_010--Hb_000122_030 Hb_121550_010--Hb_115919_010 Hb_004807_060 Hb_004807_060 Hb_001057_050--Hb_004807_060 Hb_000193_350 Hb_000193_350 Hb_001057_050--Hb_000193_350 Hb_102156_010 Hb_102156_010 Hb_001057_050--Hb_102156_010 Hb_000175_400 Hb_000175_400 Hb_001057_050--Hb_000175_400 Hb_017711_010 Hb_017711_010 Hb_001057_050--Hb_017711_010 Hb_002259_150 Hb_002259_150 Hb_001057_050--Hb_002259_150 Hb_000001_040--Hb_000265_130 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_007188_020 Hb_007188_020 Hb_000001_040--Hb_007188_020 Hb_000176_120 Hb_000176_120 Hb_000001_040--Hb_000176_120 Hb_000001_040--Hb_004117_180 Hb_000001_040--Hb_003581_010 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_027445_060 Hb_027445_060 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32048 1.71892 1.10213 5.48991 4.04576 75.6173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0968 40.264 2.76722 5.49367 1.19123

CAGE analysis