Hb_000832_280

Information

Type -
Description -
Location Contig832: 257837-258945
Sequence    

Annotation

kegg
ID tcc:TCM_042892
description Tonoplast intrinsic protein 1,3
nr
ID XP_012081560.1
description PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
swissprot
ID O82598
description Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1
trembl
ID A0A067K4A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18448 PE=3 SV=1
Gene Ontology
ID GO:0005737
description aquaporin tip1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59856: 257724-258932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_280 0.0 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
2 Hb_000181_210 0.0882289935 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
3 Hb_001287_060 0.1158535138 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
4 Hb_000056_350 0.1239441971 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
5 Hb_004324_030 0.126784184 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
6 Hb_000002_360 0.1275190905 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
7 Hb_026549_050 0.1313214666 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
8 Hb_001922_060 0.1352341049 - - ATP binding protein, putative [Ricinus communis]
9 Hb_042509_020 0.1400935186 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
10 Hb_002028_160 0.1406191061 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
11 Hb_001456_050 0.1419798081 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_000216_050 0.15730201 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
13 Hb_000540_040 0.165997848 - - PREDICTED: chitinase 2 [Amborella trichopoda]
14 Hb_003142_060 0.1705192419 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000059_300 0.170813314 - - caspase, putative [Ricinus communis]
16 Hb_001433_160 0.1727658168 - - phosphatase 2C family protein [Populus trichocarpa]
17 Hb_000005_340 0.1731457483 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
18 Hb_000003_020 0.1747330674 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
19 Hb_000834_040 0.1778721198 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
20 Hb_001341_200 0.1787951321 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_280 Hb_000832_280 Hb_000181_210 Hb_000181_210 Hb_000832_280--Hb_000181_210 Hb_001287_060 Hb_001287_060 Hb_000832_280--Hb_001287_060 Hb_000056_350 Hb_000056_350 Hb_000832_280--Hb_000056_350 Hb_004324_030 Hb_004324_030 Hb_000832_280--Hb_004324_030 Hb_000002_360 Hb_000002_360 Hb_000832_280--Hb_000002_360 Hb_026549_050 Hb_026549_050 Hb_000832_280--Hb_026549_050 Hb_000181_210--Hb_026549_050 Hb_042509_020 Hb_042509_020 Hb_000181_210--Hb_042509_020 Hb_000181_210--Hb_004324_030 Hb_001922_060 Hb_001922_060 Hb_000181_210--Hb_001922_060 Hb_000181_210--Hb_000056_350 Hb_000216_050 Hb_000216_050 Hb_001287_060--Hb_000216_050 Hb_001287_060--Hb_004324_030 Hb_001287_060--Hb_000181_210 Hb_001456_050 Hb_001456_050 Hb_001287_060--Hb_001456_050 Hb_001287_060--Hb_001922_060 Hb_002571_070 Hb_002571_070 Hb_000056_350--Hb_002571_070 Hb_000059_300 Hb_000059_300 Hb_000056_350--Hb_000059_300 Hb_000540_040 Hb_000540_040 Hb_000056_350--Hb_000540_040 Hb_000056_350--Hb_000002_360 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_004324_030--Hb_042509_020 Hb_004324_030--Hb_026549_050 Hb_000003_020 Hb_000003_020 Hb_004324_030--Hb_000003_020 Hb_004324_030--Hb_000216_050 Hb_000002_360--Hb_026549_050 Hb_000866_320 Hb_000866_320 Hb_000002_360--Hb_000866_320 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_000002_360--Hb_001922_060 Hb_026549_050--Hb_001922_060 Hb_026549_050--Hb_000003_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0573164 19.4008 10.2865 29.6772 0.051063 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91172 2.89254 2.09588 25.0374 6.89023

CAGE analysis