Hb_000832_300

Information

Type -
Description -
Location Contig832: 270110-270538
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID K4BPI4
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g010300.2 PE=4 SV=1
Gene Ontology
ID GO:0005634
description abc transporter b family member 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59857: 269904-270409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_300 0.0 - - -
2 Hb_002291_070 0.0749872472 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
3 Hb_000096_180 0.0880236468 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_002471_210 0.1008456675 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
5 Hb_014497_090 0.1019136949 - - hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]
6 Hb_001811_120 0.1049451633 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
7 Hb_027073_060 0.1063547883 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
8 Hb_000780_220 0.1066955049 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
9 Hb_003623_030 0.1067159312 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
10 Hb_000504_150 0.1070660204 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
11 Hb_002217_150 0.1096045195 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
12 Hb_004543_030 0.1100137349 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
13 Hb_000475_020 0.1113704745 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
14 Hb_000170_190 0.112580539 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
15 Hb_000250_070 0.1142174306 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
16 Hb_002084_040 0.1167466298 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
17 Hb_010315_090 0.1175727836 - - suppressor of ty, putative [Ricinus communis]
18 Hb_002043_170 0.117942816 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
19 Hb_007904_180 0.1185374009 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
20 Hb_002524_040 0.119324911 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000832_300 Hb_000832_300 Hb_002291_070 Hb_002291_070 Hb_000832_300--Hb_002291_070 Hb_000096_180 Hb_000096_180 Hb_000832_300--Hb_000096_180 Hb_002471_210 Hb_002471_210 Hb_000832_300--Hb_002471_210 Hb_014497_090 Hb_014497_090 Hb_000832_300--Hb_014497_090 Hb_001811_120 Hb_001811_120 Hb_000832_300--Hb_001811_120 Hb_027073_060 Hb_027073_060 Hb_000832_300--Hb_027073_060 Hb_002291_070--Hb_002471_210 Hb_007849_020 Hb_007849_020 Hb_002291_070--Hb_007849_020 Hb_000780_220 Hb_000780_220 Hb_002291_070--Hb_000780_220 Hb_000475_020 Hb_000475_020 Hb_002291_070--Hb_000475_020 Hb_000250_070 Hb_000250_070 Hb_002291_070--Hb_000250_070 Hb_001322_210 Hb_001322_210 Hb_002291_070--Hb_001322_210 Hb_000096_180--Hb_027073_060 Hb_025477_060 Hb_025477_060 Hb_000096_180--Hb_025477_060 Hb_000096_180--Hb_002291_070 Hb_002043_170 Hb_002043_170 Hb_000096_180--Hb_002043_170 Hb_001437_100 Hb_001437_100 Hb_000096_180--Hb_001437_100 Hb_000002_440 Hb_000002_440 Hb_000096_180--Hb_000002_440 Hb_002471_210--Hb_007849_020 Hb_002471_210--Hb_000475_020 Hb_002471_210--Hb_001811_120 Hb_002471_210--Hb_000250_070 Hb_002471_210--Hb_001322_210 Hb_002524_040 Hb_002524_040 Hb_014497_090--Hb_002524_040 Hb_004543_030 Hb_004543_030 Hb_014497_090--Hb_004543_030 Hb_002084_040 Hb_002084_040 Hb_014497_090--Hb_002084_040 Hb_034243_020 Hb_034243_020 Hb_014497_090--Hb_034243_020 Hb_004884_010 Hb_004884_010 Hb_014497_090--Hb_004884_010 Hb_001811_120--Hb_000475_020 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_001811_120--Hb_000250_070 Hb_007904_180 Hb_007904_180 Hb_001811_120--Hb_007904_180 Hb_001811_120--Hb_002291_070 Hb_007885_070 Hb_007885_070 Hb_027073_060--Hb_007885_070 Hb_027073_060--Hb_025477_060 Hb_027073_060--Hb_000250_070 Hb_000357_080 Hb_000357_080 Hb_027073_060--Hb_000357_080 Hb_027073_060--Hb_002043_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76833 4.32052 0.953518 0.82438 6.08013 7.28659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.97232 0.961312 2.01901 3.02332 4.44223

CAGE analysis