Hb_000833_080

Information

Type -
Description -
Location Contig833: 193193-200714
Sequence    

Annotation

kegg
ID sot:102584707
description uncharacterized LOC102584707
nr
ID XP_012472351.1
description PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000833_080 0.0 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
2 Hb_000696_320 0.0289926829 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
3 Hb_043950_010 0.1129193745 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
4 Hb_173423_010 0.1489537014 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007545_160 0.1563918894 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
6 Hb_000580_040 0.1699021938 - - -
7 Hb_001125_020 0.1790578447 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
8 Hb_004410_060 0.1915823404 - - -
9 Hb_124976_010 0.2113603259 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_019859_030 0.2182912662 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
11 Hb_007139_010 0.21857282 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
12 Hb_012815_020 0.2192859519 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_057486_010 0.2229744301 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
14 Hb_000078_040 0.2329375963 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
15 Hb_022348_020 0.2517783955 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_003581_040 0.2538243287 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
17 Hb_001385_050 0.2543053746 - - catalytic, putative [Ricinus communis]
18 Hb_002871_200 0.2548607277 - - -
19 Hb_000094_060 0.2571105189 - - -
20 Hb_000005_210 0.2729480716 - - -

Gene co-expression network

sample Hb_000833_080 Hb_000833_080 Hb_000696_320 Hb_000696_320 Hb_000833_080--Hb_000696_320 Hb_043950_010 Hb_043950_010 Hb_000833_080--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_000833_080--Hb_173423_010 Hb_007545_160 Hb_007545_160 Hb_000833_080--Hb_007545_160 Hb_000580_040 Hb_000580_040 Hb_000833_080--Hb_000580_040 Hb_001125_020 Hb_001125_020 Hb_000833_080--Hb_001125_020 Hb_000696_320--Hb_043950_010 Hb_000696_320--Hb_001125_020 Hb_000696_320--Hb_173423_010 Hb_000696_320--Hb_007545_160 Hb_000696_320--Hb_000580_040 Hb_043950_010--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_043950_010--Hb_004410_060 Hb_124976_010 Hb_124976_010 Hb_043950_010--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_043950_010--Hb_019859_030 Hb_007139_010 Hb_007139_010 Hb_043950_010--Hb_007139_010 Hb_012815_020 Hb_012815_020 Hb_043950_010--Hb_012815_020 Hb_173423_010--Hb_000580_040 Hb_173423_010--Hb_043950_010 Hb_173423_010--Hb_007545_160 Hb_173423_010--Hb_004410_060 Hb_007545_160--Hb_004410_060 Hb_007545_160--Hb_124976_010 Hb_007545_160--Hb_019859_030 Hb_007545_160--Hb_007139_010 Hb_007545_160--Hb_012815_020 Hb_000580_040--Hb_043950_010 Hb_000580_040--Hb_007545_160 Hb_000580_040--Hb_004410_060 Hb_000580_040--Hb_124976_010 Hb_000580_040--Hb_019859_030 Hb_001385_050 Hb_001385_050 Hb_001125_020--Hb_001385_050 Hb_000116_080 Hb_000116_080 Hb_001125_020--Hb_000116_080 Hb_001206_070 Hb_001206_070 Hb_001125_020--Hb_001206_070 Hb_000005_210 Hb_000005_210 Hb_001125_020--Hb_000005_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0514889 0 0 0 0.313032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis