Hb_000834_100

Information

Type -
Description -
Location Contig834: 72068-78199
Sequence    

Annotation

kegg
ID rcu:RCOM_1052750
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_011100123.1
description PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
swissprot
ID Q8VZ80
description Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2
trembl
ID B9RKQ8
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1052750 PE=3 SV=1
Gene Ontology
ID GO:0016021
description polyol transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59875: 73285-73447 , PASA_asmbl_59876: 76641-76897 , PASA_asmbl_59877: 77250-77834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_100 0.0 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
2 Hb_002902_070 0.0840721527 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
3 Hb_001305_020 0.0861715659 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
4 Hb_003858_060 0.0918630818 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
5 Hb_000427_040 0.1018058861 - - Gibberellin receptor GID1, putative [Ricinus communis]
6 Hb_000069_540 0.1047783868 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
7 Hb_004204_220 0.106444673 - - -
8 Hb_143871_010 0.1072700289 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
9 Hb_005051_010 0.1114518598 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
10 Hb_000215_290 0.1179709063 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
11 Hb_032779_010 0.1240317993 - - unnamed protein product [Vitis vinifera]
12 Hb_000868_130 0.1241705543 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
13 Hb_144703_010 0.1251088045 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
14 Hb_000622_030 0.1252441661 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
15 Hb_000956_100 0.1257258285 - - Cucumisin precursor, putative [Ricinus communis]
16 Hb_003226_230 0.1281999847 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
17 Hb_143629_200 0.129358469 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
18 Hb_002010_070 0.1295909325 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
19 Hb_000245_100 0.1301597012 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
20 Hb_027892_050 0.1303501324 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000834_100 Hb_000834_100 Hb_002902_070 Hb_002902_070 Hb_000834_100--Hb_002902_070 Hb_001305_020 Hb_001305_020 Hb_000834_100--Hb_001305_020 Hb_003858_060 Hb_003858_060 Hb_000834_100--Hb_003858_060 Hb_000427_040 Hb_000427_040 Hb_000834_100--Hb_000427_040 Hb_000069_540 Hb_000069_540 Hb_000834_100--Hb_000069_540 Hb_004204_220 Hb_004204_220 Hb_000834_100--Hb_004204_220 Hb_002902_070--Hb_000069_540 Hb_000868_130 Hb_000868_130 Hb_002902_070--Hb_000868_130 Hb_002902_070--Hb_001305_020 Hb_002902_070--Hb_000427_040 Hb_144703_010 Hb_144703_010 Hb_002902_070--Hb_144703_010 Hb_000622_030 Hb_000622_030 Hb_001305_020--Hb_000622_030 Hb_005051_010 Hb_005051_010 Hb_001305_020--Hb_005051_010 Hb_005723_090 Hb_005723_090 Hb_001305_020--Hb_005723_090 Hb_001158_250 Hb_001158_250 Hb_001305_020--Hb_001158_250 Hb_003858_060--Hb_004204_220 Hb_002876_280 Hb_002876_280 Hb_003858_060--Hb_002876_280 Hb_000856_210 Hb_000856_210 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_001629_050 Hb_001629_050 Hb_003858_060--Hb_001629_050 Hb_032779_010 Hb_032779_010 Hb_000427_040--Hb_032779_010 Hb_000427_040--Hb_005051_010 Hb_014700_030 Hb_014700_030 Hb_000427_040--Hb_014700_030 Hb_000427_040--Hb_001305_020 Hb_000427_040--Hb_000069_540 Hb_000069_540--Hb_144703_010 Hb_019496_040 Hb_019496_040 Hb_000069_540--Hb_019496_040 Hb_000069_540--Hb_000868_130 Hb_008598_010 Hb_008598_010 Hb_000069_540--Hb_008598_010 Hb_002902_040 Hb_002902_040 Hb_000069_540--Hb_002902_040 Hb_004204_220--Hb_001629_050 Hb_011161_090 Hb_011161_090 Hb_004204_220--Hb_011161_090 Hb_002095_020 Hb_002095_020 Hb_004204_220--Hb_002095_020 Hb_004204_220--Hb_002902_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.570917 0.247587 0.700197 0.0109075 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.247285 0.910844

CAGE analysis