Hb_000834_120

Information

Type transcription factor
Description TF Family: OFP
Location Contig834: 81764-82669
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08740g
description POPTRDRAFT_779303; hypothetical protein
nr
ID XP_011043465.1
description PREDICTED: transcription repressor OFP8 [Populus euphratica]
swissprot
ID Q3E9B4
description Transcription repressor OFP8 OS=Arabidopsis thaliana GN=OFP8 PE=2 SV=1
trembl
ID B9ILM5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s08740g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59878: 82108-82473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_120 0.0 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
2 Hb_000373_090 0.001385408 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
3 Hb_003486_040 0.00172552 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
4 Hb_004881_090 0.0024810994 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
5 Hb_000049_320 0.002670847 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
6 Hb_006111_050 0.0067545214 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
7 Hb_008686_050 0.0074784646 - - -
8 Hb_000172_040 0.0088353388 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
9 Hb_126871_010 0.0092610497 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
10 Hb_009615_140 0.0095749897 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
11 Hb_039046_010 0.011221348 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
12 Hb_004324_180 0.0164393573 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_008895_010 0.0177816221 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003914_040 0.0195752708 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
15 Hb_007040_020 0.0195828267 - - -
16 Hb_000295_150 0.0203841919 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_000125_050 0.0249035847 - - -
18 Hb_176760_010 0.0261373914 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
19 Hb_000494_140 0.0264613941 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
20 Hb_000039_130 0.0285773411 - - -

Gene co-expression network

sample Hb_000834_120 Hb_000834_120 Hb_000373_090 Hb_000373_090 Hb_000834_120--Hb_000373_090 Hb_003486_040 Hb_003486_040 Hb_000834_120--Hb_003486_040 Hb_004881_090 Hb_004881_090 Hb_000834_120--Hb_004881_090 Hb_000049_320 Hb_000049_320 Hb_000834_120--Hb_000049_320 Hb_006111_050 Hb_006111_050 Hb_000834_120--Hb_006111_050 Hb_008686_050 Hb_008686_050 Hb_000834_120--Hb_008686_050 Hb_000373_090--Hb_003486_040 Hb_000373_090--Hb_000049_320 Hb_000373_090--Hb_004881_090 Hb_000373_090--Hb_008686_050 Hb_000373_090--Hb_006111_050 Hb_003486_040--Hb_000049_320 Hb_003486_040--Hb_004881_090 Hb_003486_040--Hb_008686_050 Hb_003486_040--Hb_006111_050 Hb_004881_090--Hb_006111_050 Hb_004881_090--Hb_000049_320 Hb_000172_040 Hb_000172_040 Hb_004881_090--Hb_000172_040 Hb_000049_320--Hb_008686_050 Hb_000049_320--Hb_006111_050 Hb_006111_050--Hb_000172_040 Hb_126871_010 Hb_126871_010 Hb_006111_050--Hb_126871_010 Hb_009615_140 Hb_009615_140 Hb_006111_050--Hb_009615_140 Hb_039046_010 Hb_039046_010 Hb_006111_050--Hb_039046_010 Hb_008686_050--Hb_004881_090 Hb_003914_040 Hb_003914_040 Hb_008686_050--Hb_003914_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.521137 1.60367 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis