Hb_000834_170

Information

Type -
Description -
Location Contig834: 128751-130110
Sequence    

Annotation

kegg
ID rcu:RCOM_1053040
description polygalacturonase, putative
nr
ID XP_002514311.1
description polygalacturonase, putative [Ricinus communis]
swissprot
ID Q942D4
description BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1
trembl
ID B9RKR7
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1053040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_170 0.0 - - polygalacturonase, putative [Ricinus communis]
2 Hb_004109_140 0.0669193176 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011930_060 0.076559879 - - nitrate transporter, putative [Ricinus communis]
4 Hb_005305_140 0.0816002284 - - unknown [Populus trichocarpa]
5 Hb_002025_220 0.0898067017 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_005227_030 0.1094814375 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
7 Hb_002010_030 0.1114466019 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_002307_120 0.1138520557 - - scab resistance family protein [Populus trichocarpa]
9 Hb_003767_060 0.1143848822 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
10 Hb_001369_340 0.1166236439 - - Peroxisomal membrane protein 11B [Theobroma cacao]
11 Hb_001864_050 0.116766483 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
12 Hb_001953_110 0.118344679 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
13 Hb_006106_010 0.1204365397 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
14 Hb_000482_160 0.1211324392 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
15 Hb_000445_270 0.1231320248 - - ATP binding protein, putative [Ricinus communis]
16 Hb_005433_020 0.124835886 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
17 Hb_000386_010 0.126349557 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000307_150 0.1280091324 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
19 Hb_000088_230 0.1303016548 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
20 Hb_000483_470 0.1327013216 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000834_170 Hb_000834_170 Hb_004109_140 Hb_004109_140 Hb_000834_170--Hb_004109_140 Hb_011930_060 Hb_011930_060 Hb_000834_170--Hb_011930_060 Hb_005305_140 Hb_005305_140 Hb_000834_170--Hb_005305_140 Hb_002025_220 Hb_002025_220 Hb_000834_170--Hb_002025_220 Hb_005227_030 Hb_005227_030 Hb_000834_170--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_000834_170--Hb_002010_030 Hb_004109_140--Hb_005305_140 Hb_004109_140--Hb_005227_030 Hb_000386_010 Hb_000386_010 Hb_004109_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_004109_140--Hb_001864_050 Hb_000483_470 Hb_000483_470 Hb_004109_140--Hb_000483_470 Hb_011930_060--Hb_002025_220 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_001338_130 Hb_001338_130 Hb_011930_060--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_011930_060--Hb_107373_010 Hb_005305_140--Hb_000386_010 Hb_005305_140--Hb_001864_050 Hb_005305_140--Hb_002025_220 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_002025_220--Hb_004109_140 Hb_000809_190 Hb_000809_190 Hb_002025_220--Hb_000809_190 Hb_000445_270 Hb_000445_270 Hb_002025_220--Hb_000445_270 Hb_005227_030--Hb_000386_010 Hb_005227_030--Hb_005305_140 Hb_005888_060 Hb_005888_060 Hb_005227_030--Hb_005888_060 Hb_001953_110 Hb_001953_110 Hb_005227_030--Hb_001953_110 Hb_023904_010 Hb_023904_010 Hb_005227_030--Hb_023904_010 Hb_003767_060 Hb_003767_060 Hb_002010_030--Hb_003767_060 Hb_004017_030 Hb_004017_030 Hb_002010_030--Hb_004017_030 Hb_001369_340 Hb_001369_340 Hb_002010_030--Hb_001369_340 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_005433_020 Hb_005433_020 Hb_002010_030--Hb_005433_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0414671 0.155098 0.0178878 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.166192

CAGE analysis