Hb_000834_200

Information

Type -
Description -
Location Contig834: 145908-148429
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05810g
description hypothetical protein
nr
ID XP_012076675.1
description PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07234 PE=4 SV=1
Gene Ontology
ID GO:0009536
description trna 2-thiocytidine biosynthesis

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59884: 145914-148413 , PASA_asmbl_59885: 146529-146972
cDNA
(Sanger)
(ID:Location)		 033_C16.ab1: 145926-148264 , 042_E24.ab1: 145914-148244

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_200 0.0 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
2 Hb_000174_170 0.0772882864 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
3 Hb_000906_100 0.0783264292 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
4 Hb_008059_010 0.0790746202 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
5 Hb_008221_180 0.0821869227 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
6 Hb_000856_420 0.0824903833 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000679_020 0.087206887 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
8 Hb_001123_260 0.0874508135 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
9 Hb_000864_030 0.0890844964 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
10 Hb_025557_050 0.0940114354 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
11 Hb_001662_140 0.0946209213 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
12 Hb_004310_140 0.0953855387 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_003038_200 0.09561303 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
14 Hb_071188_010 0.0960131074 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
15 Hb_007765_100 0.0968119972 - - PREDICTED: helicase SKI2W [Jatropha curcas]
16 Hb_007590_020 0.0970490093 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
17 Hb_031284_010 0.097185802 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
18 Hb_007657_010 0.0972600935 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000317_050 0.0972824992 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
20 Hb_001244_150 0.0973428295 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]

Gene co-expression network

sample Hb_000834_200 Hb_000834_200 Hb_000174_170 Hb_000174_170 Hb_000834_200--Hb_000174_170 Hb_000906_100 Hb_000906_100 Hb_000834_200--Hb_000906_100 Hb_008059_010 Hb_008059_010 Hb_000834_200--Hb_008059_010 Hb_008221_180 Hb_008221_180 Hb_000834_200--Hb_008221_180 Hb_000856_420 Hb_000856_420 Hb_000834_200--Hb_000856_420 Hb_000679_020 Hb_000679_020 Hb_000834_200--Hb_000679_020 Hb_000864_030 Hb_000864_030 Hb_000174_170--Hb_000864_030 Hb_000165_040 Hb_000165_040 Hb_000174_170--Hb_000165_040 Hb_006483_110 Hb_006483_110 Hb_000174_170--Hb_006483_110 Hb_000174_170--Hb_000679_020 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_000174_170--Hb_008059_010 Hb_000906_100--Hb_000679_020 Hb_001999_290 Hb_001999_290 Hb_000906_100--Hb_001999_290 Hb_001498_010 Hb_001498_010 Hb_000906_100--Hb_001498_010 Hb_000473_110 Hb_000473_110 Hb_000906_100--Hb_000473_110 Hb_003203_030 Hb_003203_030 Hb_000906_100--Hb_003203_030 Hb_031284_010 Hb_031284_010 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_000115_280 Hb_000115_280 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_007657_010 Hb_007657_010 Hb_008221_180--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_008221_180--Hb_000343_250 Hb_009486_060 Hb_009486_060 Hb_008221_180--Hb_009486_060 Hb_000346_060 Hb_000346_060 Hb_008221_180--Hb_000346_060 Hb_001671_010 Hb_001671_010 Hb_008221_180--Hb_001671_010 Hb_000317_050 Hb_000317_050 Hb_008221_180--Hb_000317_050 Hb_010812_050 Hb_010812_050 Hb_000856_420--Hb_010812_050 Hb_008695_110 Hb_008695_110 Hb_000856_420--Hb_008695_110 Hb_000856_420--Hb_008059_010 Hb_022256_060 Hb_022256_060 Hb_000856_420--Hb_022256_060 Hb_000856_420--Hb_000343_250 Hb_000679_020--Hb_000864_030 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000563_420 Hb_000563_420 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.2148 44.4505 42.9276 23.4789 58.3951 39.6322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.4595 35.1587 26.9116 26.4463 68.3658

CAGE analysis