Hb_000834_210

Information

Type -
Description -
Location Contig834: 149394-149952
Sequence    

Annotation

kegg
ID vvi:100257802
description uncharacterized LOC100257802
nr
ID CBI28080.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7TBP5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59884: 145914-148413 , PASA_asmbl_59887: 149386-149872
cDNA
(Sanger)
(ID:Location)		 023_N08.ab1: 149386-149872 , 050_C08.ab1: 149386-149872

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_210 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003160_050 0.0586967823 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_007313_010 0.058991295 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
4 Hb_000723_240 0.0719284155 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
5 Hb_002003_010 0.1035078897 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
6 Hb_011861_020 0.1073581861 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
7 Hb_000057_180 0.1108600976 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
8 Hb_004010_090 0.1144168105 - - ATP binding protein, putative [Ricinus communis]
9 Hb_002475_030 0.1167035304 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001514_070 0.1193434773 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000017_320 0.1230126806 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
12 Hb_000393_030 0.1256248964 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_004128_090 0.1280531001 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
14 Hb_003768_100 0.1289587076 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
15 Hb_000139_500 0.1302766096 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
16 Hb_000471_010 0.1307862289 - - ATP binding protein, putative [Ricinus communis]
17 Hb_028927_010 0.1335973207 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_000684_490 0.135469458 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
19 Hb_000589_100 0.1359578646 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_001545_270 0.1374651523 - - laccase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000834_210 Hb_000834_210 Hb_003160_050 Hb_003160_050 Hb_000834_210--Hb_003160_050 Hb_007313_010 Hb_007313_010 Hb_000834_210--Hb_007313_010 Hb_000723_240 Hb_000723_240 Hb_000834_210--Hb_000723_240 Hb_002003_010 Hb_002003_010 Hb_000834_210--Hb_002003_010 Hb_011861_020 Hb_011861_020 Hb_000834_210--Hb_011861_020 Hb_000057_180 Hb_000057_180 Hb_000834_210--Hb_000057_180 Hb_003160_050--Hb_000723_240 Hb_003160_050--Hb_007313_010 Hb_003768_100 Hb_003768_100 Hb_003160_050--Hb_003768_100 Hb_000139_500 Hb_000139_500 Hb_003160_050--Hb_000139_500 Hb_003160_050--Hb_002003_010 Hb_007313_010--Hb_000723_240 Hb_007313_010--Hb_003768_100 Hb_001514_070 Hb_001514_070 Hb_007313_010--Hb_001514_070 Hb_003734_120 Hb_003734_120 Hb_007313_010--Hb_003734_120 Hb_008418_010 Hb_008418_010 Hb_000723_240--Hb_008418_010 Hb_001922_010 Hb_001922_010 Hb_000723_240--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_000017_320 Hb_000017_320 Hb_002003_010--Hb_000017_320 Hb_001349_020 Hb_001349_020 Hb_002003_010--Hb_001349_020 Hb_005730_070 Hb_005730_070 Hb_002003_010--Hb_005730_070 Hb_001114_120 Hb_001114_120 Hb_002003_010--Hb_001114_120 Hb_000471_010 Hb_000471_010 Hb_011861_020--Hb_000471_010 Hb_150730_010 Hb_150730_010 Hb_011861_020--Hb_150730_010 Hb_000005_350 Hb_000005_350 Hb_011861_020--Hb_000005_350 Hb_116469_010 Hb_116469_010 Hb_011861_020--Hb_116469_010 Hb_011861_020--Hb_000057_180 Hb_000684_490 Hb_000684_490 Hb_011861_020--Hb_000684_490 Hb_000057_180--Hb_150730_010 Hb_000057_180--Hb_116469_010 Hb_028927_010 Hb_028927_010 Hb_000057_180--Hb_028927_010 Hb_000057_180--Hb_000471_010 Hb_002003_030 Hb_002003_030 Hb_000057_180--Hb_002003_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.25876 8.53517 11.5306 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.16779 0 28.8999 4.95112

CAGE analysis