Hb_000834_220

Information

Type -
Description -
Location Contig834: 154602-159218
Sequence    

Annotation

kegg
ID rcu:RCOM_1053110
description hypothetical protein
nr
ID XP_012076674.1
description PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID A0A067KBX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59888: 154720-159268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_220 0.0 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
2 Hb_001440_010 0.0748607923 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
3 Hb_005144_060 0.0803055254 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
4 Hb_002918_120 0.0875377607 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_003656_090 0.0922765673 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
6 Hb_001936_180 0.0924838437 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
7 Hb_001597_030 0.0926125169 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
8 Hb_001019_160 0.0968979665 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000230_360 0.0981579387 - - PREDICTED: BI1-like protein [Jatropha curcas]
10 Hb_022092_110 0.1043943701 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
11 Hb_031385_010 0.1048454332 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
12 Hb_001946_200 0.1055366951 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
13 Hb_001040_080 0.1066389105 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
14 Hb_015001_030 0.1076354047 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
15 Hb_002301_370 0.110856098 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
16 Hb_002027_430 0.1126866921 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
17 Hb_001638_150 0.1128632743 - - acyltransferase, putative [Ricinus communis]
18 Hb_000735_060 0.1168533048 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
19 Hb_008175_050 0.117160053 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
20 Hb_000834_180 0.1174147748 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000834_220 Hb_000834_220 Hb_001440_010 Hb_001440_010 Hb_000834_220--Hb_001440_010 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_001946_200 Hb_001946_200 Hb_001440_010--Hb_001946_200 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_001440_010--Hb_003656_090 Hb_001440_010--Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001440_010--Hb_022092_110 Hb_005144_060--Hb_002918_120 Hb_002805_180 Hb_002805_180 Hb_005144_060--Hb_002805_180 Hb_019570_010 Hb_019570_010 Hb_005144_060--Hb_019570_010 Hb_004592_010 Hb_004592_010 Hb_005144_060--Hb_004592_010 Hb_001104_150 Hb_001104_150 Hb_005144_060--Hb_001104_150 Hb_004446_060 Hb_004446_060 Hb_002918_120--Hb_004446_060 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_001437_260 Hb_001437_260 Hb_002918_120--Hb_001437_260 Hb_021346_020 Hb_021346_020 Hb_002918_120--Hb_021346_020 Hb_008175_050 Hb_008175_050 Hb_003656_090--Hb_008175_050 Hb_001138_070 Hb_001138_070 Hb_003656_090--Hb_001138_070 Hb_015001_030 Hb_015001_030 Hb_003656_090--Hb_015001_030 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160 Hb_001936_180--Hb_022092_110 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_000418_170 Hb_000418_170 Hb_001936_180--Hb_000418_170 Hb_001157_190 Hb_001157_190 Hb_001597_030--Hb_001157_190 Hb_000011_370 Hb_000011_370 Hb_001597_030--Hb_000011_370 Hb_000749_120 Hb_000749_120 Hb_001597_030--Hb_000749_120 Hb_003540_120 Hb_003540_120 Hb_001597_030--Hb_003540_120 Hb_001597_030--Hb_001138_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.397104 4.90419 17.7019 18.2821 0.403565 0.354808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.327993 0.136635 0.202237 9.6458 9.276

CAGE analysis