Hb_000834_230

Information

Type -
Description -
Location Contig834: 159732-163354
Sequence    

Annotation

kegg
ID rcu:RCOM_1053130
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012076671.1
description PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
swissprot
ID P31583
description Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1
trembl
ID A0A067KN09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07231 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rhn1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59889: 159732-163284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_230 0.0 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
2 Hb_000787_200 0.0693077088 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_080147_050 0.0717538248 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
4 Hb_000321_090 0.0820197358 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
5 Hb_000049_250 0.0871696251 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
6 Hb_000220_120 0.0880870257 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
7 Hb_001322_180 0.0885258727 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
8 Hb_006829_100 0.0886686372 - - conserved hypothetical protein [Ricinus communis]
9 Hb_020805_180 0.088684652 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
10 Hb_007765_030 0.091442995 - - PREDICTED: neutral ceramidase [Jatropha curcas]
11 Hb_135959_010 0.0934453599 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
12 Hb_007245_020 0.0979778487 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
13 Hb_000035_010 0.0992475937 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
14 Hb_000856_300 0.1002034598 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
15 Hb_005333_050 0.1008454528 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
16 Hb_006478_030 0.101373219 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
17 Hb_002027_190 0.1014255311 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
18 Hb_000080_110 0.1023216765 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
19 Hb_001031_090 0.1024786901 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
20 Hb_158845_060 0.1030394439 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000834_230 Hb_000834_230 Hb_000787_200 Hb_000787_200 Hb_000834_230--Hb_000787_200 Hb_080147_050 Hb_080147_050 Hb_000834_230--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_000834_230--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_000834_230--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000834_230--Hb_000220_120 Hb_001322_180 Hb_001322_180 Hb_000834_230--Hb_001322_180 Hb_000318_150 Hb_000318_150 Hb_000787_200--Hb_000318_150 Hb_011674_040 Hb_011674_040 Hb_000787_200--Hb_011674_040 Hb_000787_200--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000787_200--Hb_000342_050 Hb_000270_170 Hb_000270_170 Hb_000787_200--Hb_000270_170 Hb_020805_180 Hb_020805_180 Hb_080147_050--Hb_020805_180 Hb_080147_050--Hb_000321_090 Hb_158845_060 Hb_158845_060 Hb_080147_050--Hb_158845_060 Hb_007245_020 Hb_007245_020 Hb_080147_050--Hb_007245_020 Hb_000080_110 Hb_000080_110 Hb_000321_090--Hb_000080_110 Hb_002027_190 Hb_002027_190 Hb_000321_090--Hb_002027_190 Hb_000321_090--Hb_020805_180 Hb_000321_090--Hb_000049_250 Hb_000321_090--Hb_001322_180 Hb_011925_020 Hb_011925_020 Hb_000049_250--Hb_011925_020 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_005074_020 Hb_005074_020 Hb_000049_250--Hb_005074_020 Hb_000049_250--Hb_000220_120 Hb_000200_110 Hb_000200_110 Hb_000220_120--Hb_000200_110 Hb_000220_120--Hb_000787_200 Hb_001477_020 Hb_001477_020 Hb_000220_120--Hb_001477_020 Hb_000428_030 Hb_000428_030 Hb_000220_120--Hb_000428_030 Hb_000220_120--Hb_000318_150 Hb_001322_180--Hb_000049_250 Hb_006829_100 Hb_006829_100 Hb_001322_180--Hb_006829_100 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_001322_180--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46066 12.3095 9.62412 8.68267 7.06541 5.51566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82201 4.03914 3.08598 18.2293 9.65266

CAGE analysis