Hb_000834_270

Information

Type -
Description -
Location Contig834: 198901-201176
Sequence    

Annotation

kegg
ID vvi:100264919
description uncharacterized LOC100264919
nr
ID XP_012088403.1
description PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JK46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25884 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59892: 199431-199704 , PASA_asmbl_59894: 200509-202018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_270 0.0 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
2 Hb_000146_020 0.0548047733 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
3 Hb_002963_010 0.0548129755 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
4 Hb_012675_060 0.0562905167 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
5 Hb_010080_090 0.0573939893 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
6 Hb_002918_200 0.0598376023 - - -
7 Hb_001722_100 0.0629968501 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004837_140 0.0643582866 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
9 Hb_000170_010 0.0674237789 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_008878_030 0.0687155902 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
11 Hb_000025_120 0.0701618087 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
12 Hb_014720_080 0.0711948332 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
13 Hb_000331_080 0.0734362714 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
14 Hb_055062_030 0.0738875938 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
15 Hb_153112_020 0.0739519426 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
16 Hb_004586_320 0.0742642985 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
17 Hb_008289_060 0.0742670032 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
18 Hb_000009_160 0.0743779384 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
19 Hb_000671_090 0.0748502292 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
20 Hb_003175_040 0.0759100908 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000834_270 Hb_000834_270 Hb_000146_020 Hb_000146_020 Hb_000834_270--Hb_000146_020 Hb_002963_010 Hb_002963_010 Hb_000834_270--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100 Hb_000347_410 Hb_000347_410 Hb_000146_020--Hb_000347_410 Hb_003376_030 Hb_003376_030 Hb_000146_020--Hb_003376_030 Hb_007943_090 Hb_007943_090 Hb_000146_020--Hb_007943_090 Hb_002027_210 Hb_002027_210 Hb_000146_020--Hb_002027_210 Hb_008289_060 Hb_008289_060 Hb_000146_020--Hb_008289_060 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_002963_010--Hb_001722_100 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_012675_060--Hb_010080_090 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_004724_340 Hb_004724_340 Hb_010080_090--Hb_004724_340 Hb_010080_090--Hb_002963_010 Hb_010080_090--Hb_004586_320 Hb_001360_050 Hb_001360_050 Hb_010080_090--Hb_001360_050 Hb_002918_200--Hb_004837_140 Hb_004108_230 Hb_004108_230 Hb_002918_200--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_002918_200--Hb_003175_040 Hb_002918_200--Hb_000170_010 Hb_002918_200--Hb_002027_210 Hb_014720_080 Hb_014720_080 Hb_001722_100--Hb_014720_080 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_008173_090 Hb_008173_090 Hb_001722_100--Hb_008173_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.67832 2.73362 2.31976 2.38683 5.06358 5.56401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8909 11.6991 9.38897 4.41391 2.71265

CAGE analysis