Hb_000836_020

Information

Type transcription factor
Description TF Family: SNF2
Location Contig836: 33260-43832
Sequence    

Annotation

kegg
ID rcu:RCOM_1615880
description Chromo domain protein, putative (EC:2.7.11.1)
nr
ID XP_002511882.1
description Chromo domain protein, putative [Ricinus communis]
swissprot
ID Q6EVK6
description ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1
trembl
ID B9RDU3
description Chromo domain protein, putative OS=Ricinus communis GN=RCOM_1615880 PE=4 SV=1
Gene Ontology
ID GO:0005634
description atp-dependent helicase brm-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59903: 31912-33608 , PASA_asmbl_59906: 34732-43548 , PASA_asmbl_59907: 41363-41800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_020 0.0 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
2 Hb_003581_170 0.0612076686 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
3 Hb_011242_060 0.0674429816 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
4 Hb_001699_280 0.0707006011 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
5 Hb_000265_090 0.0724437043 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
6 Hb_000703_130 0.0737387186 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
7 Hb_188063_010 0.0741220684 - - hypothetical protein RCOM_1469330 [Ricinus communis]
8 Hb_002400_140 0.0746946194 - - protein kinase, putative [Ricinus communis]
9 Hb_000949_010 0.0747413396 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
10 Hb_012184_060 0.0765160009 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
11 Hb_009486_170 0.0788257204 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
12 Hb_003805_040 0.079867438 - - Sacsin [Glycine soja]
13 Hb_011947_050 0.0813120812 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
14 Hb_001662_180 0.0815285378 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
15 Hb_000665_230 0.0821876217 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
16 Hb_002095_070 0.0827162944 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
17 Hb_014834_060 0.0834481478 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
18 Hb_001951_170 0.0844571587 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
19 Hb_011828_030 0.0847144169 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
20 Hb_002333_050 0.087259296 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_020 Hb_000836_020 Hb_003581_170 Hb_003581_170 Hb_000836_020--Hb_003581_170 Hb_011242_060 Hb_011242_060 Hb_000836_020--Hb_011242_060 Hb_001699_280 Hb_001699_280 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010 Hb_000105_040 Hb_000105_040 Hb_003581_170--Hb_000105_040 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_003581_170--Hb_001699_280 Hb_003581_170--Hb_011242_060 Hb_000069_470 Hb_000069_470 Hb_011242_060--Hb_000069_470 Hb_011242_060--Hb_000265_090 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_000321_150 Hb_000321_150 Hb_011242_060--Hb_000321_150 Hb_001699_280--Hb_000105_040 Hb_001699_280--Hb_188063_010 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_000265_090--Hb_000703_130 Hb_000665_230 Hb_000665_230 Hb_000265_090--Hb_000665_230 Hb_005188_040 Hb_005188_040 Hb_000265_090--Hb_005188_040 Hb_010712_040 Hb_010712_040 Hb_000265_090--Hb_010712_040 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_002333_050 Hb_002333_050 Hb_188063_010--Hb_002333_050 Hb_000025_710 Hb_000025_710 Hb_188063_010--Hb_000025_710 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_188063_010--Hb_003581_170 Hb_188063_010--Hb_000261_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1745 36.5607 8.95912 13.2595 14.3741 21.1162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.07774 5.36988 8.76378 18.9695 20.6364

CAGE analysis