Hb_000836_050

Information

Type -
Description -
Location Contig836: 67891-73892
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_050 0.0 - - -
2 Hb_002026_230 0.1185406476 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
3 Hb_030414_050 0.1663600683 - - -
4 Hb_002609_100 0.1799514207 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
5 Hb_043655_010 0.1883170511 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
6 Hb_012150_070 0.188495501 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
7 Hb_002897_040 0.1899798659 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
8 Hb_001377_050 0.1954778271 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
9 Hb_005568_070 0.1964678035 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
10 Hb_000544_120 0.1967667257 - - PREDICTED: thymidylate kinase [Jatropha curcas]
11 Hb_000018_160 0.1973600358 - - nitrate transporter, putative [Ricinus communis]
12 Hb_007634_020 0.2050266148 - - -
13 Hb_001473_190 0.2119250634 - - 50S ribosomal protein L20 [Hevea brasiliensis]
14 Hb_002783_050 0.2142869187 - - zinc finger protein, putative [Ricinus communis]
15 Hb_002903_120 0.2147859802 - - -
16 Hb_000093_130 0.2206371558 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_001703_130 0.2210870583 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
18 Hb_031862_170 0.2225325325 - - immunophilin, putative [Ricinus communis]
19 Hb_001691_050 0.2234485468 - - -
20 Hb_060437_010 0.2272311728 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]

Gene co-expression network

sample Hb_000836_050 Hb_000836_050 Hb_002026_230 Hb_002026_230 Hb_000836_050--Hb_002026_230 Hb_030414_050 Hb_030414_050 Hb_000836_050--Hb_030414_050 Hb_002609_100 Hb_002609_100 Hb_000836_050--Hb_002609_100 Hb_043655_010 Hb_043655_010 Hb_000836_050--Hb_043655_010 Hb_012150_070 Hb_012150_070 Hb_000836_050--Hb_012150_070 Hb_002897_040 Hb_002897_040 Hb_000836_050--Hb_002897_040 Hb_002026_230--Hb_012150_070 Hb_002026_230--Hb_002609_100 Hb_007634_020 Hb_007634_020 Hb_002026_230--Hb_007634_020 Hb_005568_070 Hb_005568_070 Hb_002026_230--Hb_005568_070 Hb_000018_160 Hb_000018_160 Hb_002026_230--Hb_000018_160 Hb_060437_010 Hb_060437_010 Hb_030414_050--Hb_060437_010 Hb_003050_090 Hb_003050_090 Hb_030414_050--Hb_003050_090 Hb_000692_170 Hb_000692_170 Hb_030414_050--Hb_000692_170 Hb_002192_070 Hb_002192_070 Hb_030414_050--Hb_002192_070 Hb_007416_200 Hb_007416_200 Hb_030414_050--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_030414_050--Hb_000093_130 Hb_002609_100--Hb_012150_070 Hb_007382_040 Hb_007382_040 Hb_002609_100--Hb_007382_040 Hb_000613_020 Hb_000613_020 Hb_002609_100--Hb_000613_020 Hb_002609_100--Hb_030414_050 Hb_002609_100--Hb_003050_090 Hb_001691_050 Hb_001691_050 Hb_043655_010--Hb_001691_050 Hb_002232_290 Hb_002232_290 Hb_043655_010--Hb_002232_290 Hb_043655_010--Hb_002026_230 Hb_000590_080 Hb_000590_080 Hb_043655_010--Hb_000590_080 Hb_029510_010 Hb_029510_010 Hb_043655_010--Hb_029510_010 Hb_012150_070--Hb_000018_160 Hb_012150_070--Hb_005568_070 Hb_000580_060 Hb_000580_060 Hb_012150_070--Hb_000580_060 Hb_004307_040 Hb_004307_040 Hb_012150_070--Hb_004307_040 Hb_006631_010 Hb_006631_010 Hb_002897_040--Hb_006631_010 Hb_000173_210 Hb_000173_210 Hb_002897_040--Hb_000173_210 Hb_000544_120 Hb_000544_120 Hb_002897_040--Hb_000544_120 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_000173_370 Hb_000173_370 Hb_002897_040--Hb_000173_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.14176 0.937822 0.335949 0 2.75063 1.55218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0817173 0.192721 0.343599 0.026146 0

CAGE analysis