Hb_000836_060

Information

Type -
Description -
Location Contig836: 80071-94469
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08280g
description POPTRDRAFT_898169; hypothetical protein
nr
ID XP_012083353.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
swissprot
ID Q39203
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1
trembl
ID A0A067K9W1
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_14375 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59915: 91253-93878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_060 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
2 Hb_030959_010 0.1126730339 - - cullin, putative [Ricinus communis]
3 Hb_000106_030 0.11976645 - - amino acid transporter, putative [Ricinus communis]
4 Hb_002611_010 0.1198072837 - - amino acid transporter, putative [Ricinus communis]
5 Hb_009674_050 0.1250771635 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_001473_170 0.1279632184 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
7 Hb_005348_110 0.1307961789 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_009252_010 0.1328730854 - - PREDICTED: kinesin light chain [Jatropha curcas]
9 Hb_000258_050 0.1368230561 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
10 Hb_000601_040 0.1370613334 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
11 Hb_000181_460 0.1379645772 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
12 Hb_001546_010 0.1400145422 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010390_010 0.1420389968 - - casein kinase, putative [Ricinus communis]
14 Hb_005116_140 0.1448987152 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
15 Hb_010288_060 0.1488369948 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
16 Hb_009803_020 0.1500371723 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
17 Hb_009711_050 0.1513577152 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
18 Hb_003778_020 0.1581758869 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_005016_010 0.1584694811 - - AMP dependent CoA ligase, putative [Ricinus communis]
20 Hb_000684_310 0.1631070194 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_060 Hb_000836_060 Hb_030959_010 Hb_030959_010 Hb_000836_060--Hb_030959_010 Hb_000106_030 Hb_000106_030 Hb_000836_060--Hb_000106_030 Hb_002611_010 Hb_002611_010 Hb_000836_060--Hb_002611_010 Hb_009674_050 Hb_009674_050 Hb_000836_060--Hb_009674_050 Hb_001473_170 Hb_001473_170 Hb_000836_060--Hb_001473_170 Hb_005348_110 Hb_005348_110 Hb_000836_060--Hb_005348_110 Hb_005116_140 Hb_005116_140 Hb_030959_010--Hb_005116_140 Hb_000120_860 Hb_000120_860 Hb_030959_010--Hb_000120_860 Hb_009252_010 Hb_009252_010 Hb_030959_010--Hb_009252_010 Hb_030959_010--Hb_009674_050 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170 Hb_030959_010--Hb_002611_010 Hb_000181_460 Hb_000181_460 Hb_000106_030--Hb_000181_460 Hb_132840_070 Hb_132840_070 Hb_000106_030--Hb_132840_070 Hb_000110_060 Hb_000110_060 Hb_000106_030--Hb_000110_060 Hb_000849_120 Hb_000849_120 Hb_000106_030--Hb_000849_120 Hb_003778_020 Hb_003778_020 Hb_000106_030--Hb_003778_020 Hb_003517_070 Hb_003517_070 Hb_002611_010--Hb_003517_070 Hb_000613_070 Hb_000613_070 Hb_002611_010--Hb_000613_070 Hb_001080_300 Hb_001080_300 Hb_002611_010--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_002611_010--Hb_138585_080 Hb_002611_010--Hb_009674_050 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_009674_050--Hb_005348_110 Hb_009674_050--Hb_009252_010 Hb_009674_050--Hb_005116_140 Hb_002311_130 Hb_002311_130 Hb_001473_170--Hb_002311_130 Hb_010390_010 Hb_010390_010 Hb_001473_170--Hb_010390_010 Hb_000258_050 Hb_000258_050 Hb_001473_170--Hb_000258_050 Hb_000494_030 Hb_000494_030 Hb_001473_170--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_001473_170--Hb_004030_060 Hb_007313_040 Hb_007313_040 Hb_001473_170--Hb_007313_040 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_005348_110--Hb_009252_010 Hb_000011_220 Hb_000011_220 Hb_005348_110--Hb_000011_220 Hb_010175_030 Hb_010175_030 Hb_005348_110--Hb_010175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03917 3.20788 2.33109 13.6616 1.13145 1.36674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93875 2.51789 3.39373 7.37683 15.806

CAGE analysis