Hb_000836_080

Information

Type -
Description -
Location Contig836: 102981-104795
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08300g
description POPTRDRAFT_807325; hypothetical protein
nr
ID XP_012083839.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
swissprot
ID O82363
description Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=3 SV=1
trembl
ID B9I8M2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s08300g PE=4 SV=2
Gene Ontology
ID GO:0016772
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
2 Hb_000156_100 0.087591592 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
3 Hb_006846_110 0.1009972533 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
4 Hb_003943_030 0.1029411823 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
5 Hb_001338_040 0.1048954725 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
6 Hb_131864_040 0.1061949401 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
7 Hb_007747_200 0.1072471285 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
8 Hb_000574_350 0.1074824464 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
9 Hb_000317_280 0.1091073671 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
10 Hb_000223_150 0.1134020406 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
11 Hb_001959_160 0.1168987796 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
12 Hb_000019_130 0.1189501383 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
13 Hb_002603_160 0.122195336 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
14 Hb_000179_050 0.124539351 - - 40S ribosomal protein S17A [Hevea brasiliensis]
15 Hb_000671_150 0.1247495522 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
16 Hb_010710_040 0.1265224353 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002897_060 0.1270691499 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
18 Hb_000997_400 0.1271021678 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
19 Hb_005147_090 0.1281872423 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
20 Hb_001881_020 0.128970936 - - clathrin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_080 Hb_000836_080 Hb_000156_100 Hb_000156_100 Hb_000836_080--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_000836_080--Hb_006846_110 Hb_003943_030 Hb_003943_030 Hb_000836_080--Hb_003943_030 Hb_001338_040 Hb_001338_040 Hb_000836_080--Hb_001338_040 Hb_131864_040 Hb_131864_040 Hb_000836_080--Hb_131864_040 Hb_007747_200 Hb_007747_200 Hb_000836_080--Hb_007747_200 Hb_010710_040 Hb_010710_040 Hb_000156_100--Hb_010710_040 Hb_002794_030 Hb_002794_030 Hb_000156_100--Hb_002794_030 Hb_000983_100 Hb_000983_100 Hb_000156_100--Hb_000983_100 Hb_000836_070 Hb_000836_070 Hb_000156_100--Hb_000836_070 Hb_007229_060 Hb_007229_060 Hb_000156_100--Hb_007229_060 Hb_006846_110--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_006846_110--Hb_003018_190 Hb_000223_150 Hb_000223_150 Hb_006846_110--Hb_000223_150 Hb_006846_110--Hb_007747_200 Hb_002603_160 Hb_002603_160 Hb_006846_110--Hb_002603_160 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090 Hb_001959_160 Hb_001959_160 Hb_003943_030--Hb_001959_160 Hb_000749_250 Hb_000749_250 Hb_003943_030--Hb_000749_250 Hb_001232_130 Hb_001232_130 Hb_003943_030--Hb_001232_130 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_003943_030--Hb_000156_100 Hb_002290_040 Hb_002290_040 Hb_003943_030--Hb_002290_040 Hb_000317_280 Hb_000317_280 Hb_001338_040--Hb_000317_280 Hb_000574_350 Hb_000574_350 Hb_001338_040--Hb_000574_350 Hb_002056_060 Hb_002056_060 Hb_001338_040--Hb_002056_060 Hb_001338_040--Hb_007747_200 Hb_000935_050 Hb_000935_050 Hb_001338_040--Hb_000935_050 Hb_131864_040--Hb_002603_160 Hb_131864_040--Hb_003018_190 Hb_016065_010 Hb_016065_010 Hb_131864_040--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_131864_040--Hb_005488_010 Hb_055062_030 Hb_055062_030 Hb_131864_040--Hb_055062_030 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_007747_200--Hb_000317_280 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.65004 0.724144 0.0337414 0.173949 0.623588 0.899622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38319 1.5434 2.17028 0.590995 0.208454

CAGE analysis