Hb_000836_140

Information

Type -
Description -
Location Contig836: 128369-130116
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13630g
description hypothetical protein
nr
ID XP_012065764.1
description PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZQZ9
description Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1
trembl
ID A0A067L818
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26488 PE=4 SV=1
Gene Ontology
ID GO:0005739
description translocon at the inner envelope membrane of chloroplasts 20-iv

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59926: 129944-130062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_140 0.0 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
2 Hb_000483_250 0.1097820934 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
3 Hb_008699_020 0.119460879 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
4 Hb_060618_010 0.1216718377 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
5 Hb_000096_130 0.1364976101 - - hypothetical protein 23 [Hevea brasiliensis]
6 Hb_002603_060 0.1367430802 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
7 Hb_000506_120 0.1381095531 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
8 Hb_002248_100 0.1458624788 - - hypothetical protein VITISV_027197 [Vitis vinifera]
9 Hb_010827_020 0.1467113327 - - 60S ribosomal protein L17B [Hevea brasiliensis]
10 Hb_001700_020 0.1496546316 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
11 Hb_054074_010 0.1501729102 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
12 Hb_001387_020 0.1520326281 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
13 Hb_000780_210 0.1530518518 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
14 Hb_002828_040 0.1538017493 - - transmembrane protein, putative [Medicago truncatula]
15 Hb_000692_010 0.1559806703 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
16 Hb_007304_070 0.1587134075 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
17 Hb_000389_080 0.1593216874 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
18 Hb_005211_190 0.1606156657 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
19 Hb_029904_040 0.1612673523 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
20 Hb_000083_090 0.1627419483 - - immunophilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_140 Hb_000836_140 Hb_000483_250 Hb_000483_250 Hb_000836_140--Hb_000483_250 Hb_008699_020 Hb_008699_020 Hb_000836_140--Hb_008699_020 Hb_060618_010 Hb_060618_010 Hb_000836_140--Hb_060618_010 Hb_000096_130 Hb_000096_130 Hb_000836_140--Hb_000096_130 Hb_002603_060 Hb_002603_060 Hb_000836_140--Hb_002603_060 Hb_000506_120 Hb_000506_120 Hb_000836_140--Hb_000506_120 Hb_005211_190 Hb_005211_190 Hb_000483_250--Hb_005211_190 Hb_002107_120 Hb_002107_120 Hb_000483_250--Hb_002107_120 Hb_000483_250--Hb_060618_010 Hb_001424_020 Hb_001424_020 Hb_000483_250--Hb_001424_020 Hb_000083_090 Hb_000083_090 Hb_000483_250--Hb_000083_090 Hb_001824_010 Hb_001824_010 Hb_008699_020--Hb_001824_010 Hb_000820_130 Hb_000820_130 Hb_008699_020--Hb_000820_130 Hb_008699_020--Hb_002107_120 Hb_001700_020 Hb_001700_020 Hb_008699_020--Hb_001700_020 Hb_000212_470 Hb_000212_470 Hb_008699_020--Hb_000212_470 Hb_007304_070 Hb_007304_070 Hb_008699_020--Hb_007304_070 Hb_002248_100 Hb_002248_100 Hb_060618_010--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_060618_010--Hb_001017_070 Hb_007943_140 Hb_007943_140 Hb_060618_010--Hb_007943_140 Hb_010827_020 Hb_010827_020 Hb_060618_010--Hb_010827_020 Hb_013839_010 Hb_013839_010 Hb_000096_130--Hb_013839_010 Hb_000096_130--Hb_002603_060 Hb_002828_040 Hb_002828_040 Hb_000096_130--Hb_002828_040 Hb_002636_080 Hb_002636_080 Hb_000096_130--Hb_002636_080 Hb_021888_050 Hb_021888_050 Hb_000096_130--Hb_021888_050 Hb_029904_040 Hb_029904_040 Hb_002603_060--Hb_029904_040 Hb_000789_110 Hb_000789_110 Hb_002603_060--Hb_000789_110 Hb_120823_010 Hb_120823_010 Hb_002603_060--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_002603_060--Hb_000300_390 Hb_152910_020 Hb_152910_020 Hb_002603_060--Hb_152910_020 Hb_002316_120 Hb_002316_120 Hb_002603_060--Hb_002316_120 Hb_020400_050 Hb_020400_050 Hb_000506_120--Hb_020400_050 Hb_002851_020 Hb_002851_020 Hb_000506_120--Hb_002851_020 Hb_000987_120 Hb_000987_120 Hb_000506_120--Hb_000987_120 Hb_000318_100 Hb_000318_100 Hb_000506_120--Hb_000318_100 Hb_000506_120--Hb_008699_020 Hb_000030_290 Hb_000030_290 Hb_000506_120--Hb_000030_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.583 1.8208 0.486943 2.34058 1.14881 1.62797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9402 11.278 2.62902 4.28521 1.86387

CAGE analysis