Hb_000836_170

Information

Type -
Description -
Location Contig836: 157254-171349
Sequence    

Annotation

kegg
ID rcu:RCOM_1616210
description hypothetical protein
nr
ID XP_012083339.1
description PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
swissprot
ID Q4ADV7
description RAB6A-GEF complex partner protein 1 OS=Homo sapiens GN=RIC1 PE=1 SV=2
trembl
ID A0A067K9U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14365 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_170 0.0 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
2 Hb_002338_020 0.0755021124 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
3 Hb_005588_030 0.0804169147 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
4 Hb_000576_050 0.081149652 - - Kinase superfamily protein [Theobroma cacao]
5 Hb_001329_130 0.0821352764 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000649_070 0.0830166436 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
7 Hb_000260_100 0.084430833 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000107_030 0.0854603762 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009421_020 0.0875714429 - - PREDICTED: caltractin-like [Jatropha curcas]
10 Hb_002918_030 0.0878568224 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
11 Hb_004449_170 0.0887375499 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
12 Hb_006120_070 0.0899361122 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
13 Hb_004093_090 0.0936239942 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
14 Hb_000331_110 0.0936452801 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
15 Hb_001186_090 0.0937888833 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
16 Hb_000245_220 0.0938199367 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
17 Hb_079526_030 0.0938291096 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
18 Hb_008642_040 0.093934234 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
19 Hb_058972_010 0.0945833781 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
20 Hb_002477_300 0.0956080573 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_170 Hb_000836_170 Hb_002338_020 Hb_002338_020 Hb_000836_170--Hb_002338_020 Hb_005588_030 Hb_005588_030 Hb_000836_170--Hb_005588_030 Hb_000576_050 Hb_000576_050 Hb_000836_170--Hb_000576_050 Hb_001329_130 Hb_001329_130 Hb_000836_170--Hb_001329_130 Hb_000649_070 Hb_000649_070 Hb_000836_170--Hb_000649_070 Hb_000260_100 Hb_000260_100 Hb_000836_170--Hb_000260_100 Hb_002110_230 Hb_002110_230 Hb_002338_020--Hb_002110_230 Hb_000245_220 Hb_000245_220 Hb_002338_020--Hb_000245_220 Hb_008642_040 Hb_008642_040 Hb_002338_020--Hb_008642_040 Hb_007163_070 Hb_007163_070 Hb_002338_020--Hb_007163_070 Hb_007533_010 Hb_007533_010 Hb_002338_020--Hb_007533_010 Hb_001012_010 Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_073973_130 Hb_073973_130 Hb_005588_030--Hb_073973_130 Hb_120410_010 Hb_120410_010 Hb_005588_030--Hb_120410_010 Hb_058972_010 Hb_058972_010 Hb_000576_050--Hb_058972_010 Hb_001418_040 Hb_001418_040 Hb_000576_050--Hb_001418_040 Hb_000576_050--Hb_000649_070 Hb_007313_090 Hb_007313_090 Hb_000576_050--Hb_007313_090 Hb_006960_050 Hb_006960_050 Hb_000576_050--Hb_006960_050 Hb_000576_050--Hb_000260_100 Hb_001329_130--Hb_000260_100 Hb_020367_050 Hb_020367_050 Hb_001329_130--Hb_020367_050 Hb_001329_130--Hb_000649_070 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_005288_150 Hb_005288_150 Hb_001329_130--Hb_005288_150 Hb_001329_130--Hb_006960_050 Hb_000649_070--Hb_006960_050 Hb_033153_070 Hb_033153_070 Hb_000649_070--Hb_033153_070 Hb_079526_030 Hb_079526_030 Hb_000649_070--Hb_079526_030 Hb_000334_270 Hb_000334_270 Hb_000649_070--Hb_000334_270 Hb_000649_070--Hb_020367_050 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000260_100--Hb_000236_240 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.84726 1.08621 2.7695 0.918801 2.07238 2.07781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99876 2.58342 0.969012 1.39015 1.34623

CAGE analysis