Hb_000836_230

Information

Type -
Description -
Location Contig836: 190942-192565
Sequence    

Annotation

kegg
ID tcc:TCM_041879
description hypothetical protein
nr
ID XP_007016482.1
description Uncharacterized protein TCM_041879 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GXA1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_041879 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_230 0.0 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
2 Hb_007403_040 0.2360239407 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000032_580 0.2379006706 - - hypothetical protein RCOM_1311780 [Ricinus communis]
4 Hb_020178_010 0.2428128219 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
5 Hb_031336_020 0.2478054126 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007181_080 0.248445538 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_001348_210 0.2487280432 - - defensin protein precursor [Capsicum annuum]
8 Hb_000086_730 0.2506579744 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1-like [Jatropha curcas]
9 Hb_000380_210 0.2632512691 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
10 Hb_001946_020 0.2642966347 - - hypothetical protein RCOM_0224470 [Ricinus communis]
11 Hb_000112_100 0.2643773371 - - glutamate receptor 2 plant, putative [Ricinus communis]
12 Hb_080225_010 0.264742444 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
13 Hb_001318_290 0.2652018336 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
14 Hb_002918_130 0.2663617457 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
15 Hb_007181_030 0.2683537523 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
16 Hb_000256_100 0.2697623238 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
17 Hb_001369_140 0.2703167561 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006788_010 0.2721638501 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
19 Hb_007545_140 0.2748099479 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
20 Hb_000540_030 0.2748942716 - - Chitinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_230 Hb_000836_230 Hb_007403_040 Hb_007403_040 Hb_000836_230--Hb_007403_040 Hb_000032_580 Hb_000032_580 Hb_000836_230--Hb_000032_580 Hb_020178_010 Hb_020178_010 Hb_000836_230--Hb_020178_010 Hb_031336_020 Hb_031336_020 Hb_000836_230--Hb_031336_020 Hb_007181_080 Hb_007181_080 Hb_000836_230--Hb_007181_080 Hb_001348_210 Hb_001348_210 Hb_000836_230--Hb_001348_210 Hb_000836_250 Hb_000836_250 Hb_007403_040--Hb_000836_250 Hb_004122_030 Hb_004122_030 Hb_007403_040--Hb_004122_030 Hb_129637_010 Hb_129637_010 Hb_007403_040--Hb_129637_010 Hb_027634_010 Hb_027634_010 Hb_007403_040--Hb_027634_010 Hb_000080_080 Hb_000080_080 Hb_007403_040--Hb_000080_080 Hb_000993_020 Hb_000993_020 Hb_007403_040--Hb_000993_020 Hb_007101_290 Hb_007101_290 Hb_000032_580--Hb_007101_290 Hb_000140_160 Hb_000140_160 Hb_000032_580--Hb_000140_160 Hb_001268_130 Hb_001268_130 Hb_000032_580--Hb_001268_130 Hb_000256_100 Hb_000256_100 Hb_000032_580--Hb_000256_100 Hb_026527_020 Hb_026527_020 Hb_000032_580--Hb_026527_020 Hb_000112_100 Hb_000112_100 Hb_020178_010--Hb_000112_100 Hb_001832_050 Hb_001832_050 Hb_020178_010--Hb_001832_050 Hb_002918_130 Hb_002918_130 Hb_020178_010--Hb_002918_130 Hb_007849_010 Hb_007849_010 Hb_020178_010--Hb_007849_010 Hb_009775_040 Hb_009775_040 Hb_020178_010--Hb_009775_040 Hb_002301_420 Hb_002301_420 Hb_031336_020--Hb_002301_420 Hb_000402_220 Hb_000402_220 Hb_031336_020--Hb_000402_220 Hb_000380_210 Hb_000380_210 Hb_031336_020--Hb_000380_210 Hb_000521_340 Hb_000521_340 Hb_031336_020--Hb_000521_340 Hb_025254_020 Hb_025254_020 Hb_031336_020--Hb_025254_020 Hb_018133_110 Hb_018133_110 Hb_031336_020--Hb_018133_110 Hb_021418_010 Hb_021418_010 Hb_007181_080--Hb_021418_010 Hb_010571_010 Hb_010571_010 Hb_007181_080--Hb_010571_010 Hb_002499_020 Hb_002499_020 Hb_007181_080--Hb_002499_020 Hb_046191_010 Hb_046191_010 Hb_007181_080--Hb_046191_010 Hb_006120_010 Hb_006120_010 Hb_007181_080--Hb_006120_010 Hb_000099_020 Hb_000099_020 Hb_007181_080--Hb_000099_020 Hb_032631_050 Hb_032631_050 Hb_001348_210--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_001348_210--Hb_000421_270 Hb_000181_160 Hb_000181_160 Hb_001348_210--Hb_000181_160 Hb_003602_070 Hb_003602_070 Hb_001348_210--Hb_003602_070 Hb_000116_590 Hb_000116_590 Hb_001348_210--Hb_000116_590 Hb_000098_310 Hb_000098_310 Hb_001348_210--Hb_000098_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0670544 0.0600947 0.259357 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.142776 0 0.545829 0

CAGE analysis