Hb_000836_260

Information

Type -
Description -
Location Contig836: 197786-200836
Sequence    

Annotation

kegg
ID rcu:RCOM_1616290
description polygalacturonase, putative (EC:3.2.1.15)
nr
ID XP_012083329.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067JXG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14358 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59932: 197765-198255 , PASA_asmbl_59933: 198278-200879 , PASA_asmbl_59934: 198472-198637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_260 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_001300_140 0.0723596646 - - -
3 Hb_000847_120 0.0762528841 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
4 Hb_009150_060 0.0885720602 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
5 Hb_004943_010 0.093792257 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_008376_020 0.1044590325 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
7 Hb_000753_180 0.1100120867 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
8 Hb_000609_020 0.1111909892 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
9 Hb_004010_090 0.1136655879 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001358_120 0.1143609551 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
11 Hb_002379_060 0.1154529047 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
12 Hb_002475_030 0.1175107635 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000215_130 0.1214742889 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
14 Hb_005333_210 0.1216428931 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
15 Hb_000000_200 0.1216883699 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
16 Hb_002685_100 0.1261197626 - - low temperature inducible SLTI66 [Glycine max]
17 Hb_011440_010 0.1263961416 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
18 Hb_000336_280 0.1269775292 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
19 Hb_000017_320 0.1284993299 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
20 Hb_019278_010 0.128766445 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_260 Hb_000836_260 Hb_001300_140 Hb_001300_140 Hb_000836_260--Hb_001300_140 Hb_000847_120 Hb_000847_120 Hb_000836_260--Hb_000847_120 Hb_009150_060 Hb_009150_060 Hb_000836_260--Hb_009150_060 Hb_004943_010 Hb_004943_010 Hb_000836_260--Hb_004943_010 Hb_008376_020 Hb_008376_020 Hb_000836_260--Hb_008376_020 Hb_000753_180 Hb_000753_180 Hb_000836_260--Hb_000753_180 Hb_011440_010 Hb_011440_010 Hb_001300_140--Hb_011440_010 Hb_001300_140--Hb_009150_060 Hb_001300_140--Hb_000753_180 Hb_005333_210 Hb_005333_210 Hb_001300_140--Hb_005333_210 Hb_000844_090 Hb_000844_090 Hb_001300_140--Hb_000844_090 Hb_000847_120--Hb_008376_020 Hb_000609_020 Hb_000609_020 Hb_000847_120--Hb_000609_020 Hb_000645_250 Hb_000645_250 Hb_000847_120--Hb_000645_250 Hb_000000_200 Hb_000000_200 Hb_000847_120--Hb_000000_200 Hb_000751_070 Hb_000751_070 Hb_000847_120--Hb_000751_070 Hb_004010_090 Hb_004010_090 Hb_009150_060--Hb_004010_090 Hb_004128_090 Hb_004128_090 Hb_009150_060--Hb_004128_090 Hb_009150_060--Hb_011440_010 Hb_010839_010 Hb_010839_010 Hb_009150_060--Hb_010839_010 Hb_168319_060 Hb_168319_060 Hb_004943_010--Hb_168319_060 Hb_007850_110 Hb_007850_110 Hb_004943_010--Hb_007850_110 Hb_002622_010 Hb_002622_010 Hb_004943_010--Hb_002622_010 Hb_000258_210 Hb_000258_210 Hb_004943_010--Hb_000258_210 Hb_001109_130 Hb_001109_130 Hb_004943_010--Hb_001109_130 Hb_008376_020--Hb_000609_020 Hb_001004_130 Hb_001004_130 Hb_008376_020--Hb_001004_130 Hb_008376_020--Hb_000000_200 Hb_008376_020--Hb_000645_250 Hb_006573_250 Hb_006573_250 Hb_008376_020--Hb_006573_250 Hb_006916_020 Hb_006916_020 Hb_000753_180--Hb_006916_020 Hb_000753_180--Hb_011440_010 Hb_000753_180--Hb_005333_210 Hb_000753_180--Hb_009150_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.683282 42.6318 136.496 110.682 0.766259 0.0998913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.038207 0.015032 0.286121 287.015 149.793

CAGE analysis