Hb_000836_270

Information

Type -
Description -
Location Contig836: 201154-207983
Sequence    

Annotation

kegg
ID rcu:RCOM_1616300
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_012083328.1
description PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
swissprot
ID Q40353
description Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1
trembl
ID A0A067JX92
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_14357 PE=3 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase homolog mmk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59935: 201157-207913 , PASA_asmbl_59938: 208914-210241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_270 0.0 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
2 Hb_000645_120 0.0751611879 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
3 Hb_001140_350 0.0805282404 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
4 Hb_000510_310 0.0810962311 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
5 Hb_000215_190 0.0813237136 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
6 Hb_001454_280 0.086082218 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
7 Hb_005321_020 0.0865518779 - - splicing factor-related family protein [Populus trichocarpa]
8 Hb_000088_130 0.0866503804 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
9 Hb_006586_050 0.0895002038 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
10 Hb_002111_070 0.091132679 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
11 Hb_000283_070 0.0911337891 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
12 Hb_003531_060 0.0963797068 - - unnamed protein product [Coffea canephora]
13 Hb_000071_030 0.098146159 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
14 Hb_000318_510 0.0981820194 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
15 Hb_000107_500 0.0994515451 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
16 Hb_003449_070 0.0996388904 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
17 Hb_002400_310 0.0998627602 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
18 Hb_000987_140 0.1013968071 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
19 Hb_002163_010 0.1018318187 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
20 Hb_006831_110 0.1020637639 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]

Gene co-expression network

sample Hb_000836_270 Hb_000836_270 Hb_000645_120 Hb_000645_120 Hb_000836_270--Hb_000645_120 Hb_001140_350 Hb_001140_350 Hb_000836_270--Hb_001140_350 Hb_000510_310 Hb_000510_310 Hb_000836_270--Hb_000510_310 Hb_000215_190 Hb_000215_190 Hb_000836_270--Hb_000215_190 Hb_001454_280 Hb_001454_280 Hb_000836_270--Hb_001454_280 Hb_005321_020 Hb_005321_020 Hb_000836_270--Hb_005321_020 Hb_000283_070 Hb_000283_070 Hb_000645_120--Hb_000283_070 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_000645_120--Hb_005321_020 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130 Hb_001140_350--Hb_001454_280 Hb_080313_010 Hb_080313_010 Hb_001140_350--Hb_080313_010 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000107_500 Hb_000107_500 Hb_000510_310--Hb_000107_500 Hb_001492_010 Hb_001492_010 Hb_000215_190--Hb_001492_010 Hb_001454_320 Hb_001454_320 Hb_000215_190--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_000215_190--Hb_000158_130 Hb_000215_190--Hb_003124_130 Hb_000215_190--Hb_000645_120 Hb_002174_020 Hb_002174_020 Hb_001454_280--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_001454_280--Hb_007635_030 Hb_001454_280--Hb_006252_020 Hb_008112_030 Hb_008112_030 Hb_001454_280--Hb_008112_030 Hb_003680_150 Hb_003680_150 Hb_001454_280--Hb_003680_150 Hb_006831_110 Hb_006831_110 Hb_005321_020--Hb_006831_110 Hb_000563_640 Hb_000563_640 Hb_005321_020--Hb_000563_640 Hb_003531_060 Hb_003531_060 Hb_005321_020--Hb_003531_060 Hb_005321_020--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_005321_020--Hb_009620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.0908 30.7841 10.1129 19.7805 30.3724 32.3657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8897 9.7214 21.8247 23.5715 6.77323

CAGE analysis