Hb_000836_310

Information

Type transcription factor
Description TF Family: WRKY
Location Contig836: 232190-234246
Sequence    

Annotation

kegg
ID tcc:TCM_005179
description WRKY DNA-binding protein 46, putative
nr
ID XP_012083322.1
description PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S5CKC9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY51 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59943: 231893-234364
cDNA
(Sanger)
(ID:Location)		 035_M12.ab1: 231893-233471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_310 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
2 Hb_000127_220 0.076599901 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
3 Hb_004032_220 0.0829460058 - - Calmodulin, putative [Ricinus communis]
4 Hb_106810_010 0.0878441008 - - receptor serine/threonine kinase, putative [Ricinus communis]
5 Hb_012496_010 0.0918879806 - - kinase, putative [Ricinus communis]
6 Hb_000340_060 0.0953468151 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000032_150 0.0989520737 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
8 Hb_001257_040 0.1020910891 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
9 Hb_007858_020 0.1048617842 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
10 Hb_047955_010 0.1131551561 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
11 Hb_000571_030 0.114811068 - - ammonium transporter, putative [Ricinus communis]
12 Hb_000422_050 0.1195767858 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
13 Hb_005618_020 0.119896361 - - hypothetical protein RCOM_1342750 [Ricinus communis]
14 Hb_113396_020 0.1285274546 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
15 Hb_124953_010 0.1286183449 - - hypothetical protein RCOM_1314600 [Ricinus communis]
16 Hb_004586_120 0.1303449019 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
17 Hb_000959_240 0.134549969 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_003207_230 0.1362667567 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
19 Hb_008725_220 0.1364909935 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
20 Hb_022768_010 0.1395154774 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]

Gene co-expression network

sample Hb_000836_310 Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_000836_310--Hb_000127_220 Hb_004032_220 Hb_004032_220 Hb_000836_310--Hb_004032_220 Hb_106810_010 Hb_106810_010 Hb_000836_310--Hb_106810_010 Hb_012496_010 Hb_012496_010 Hb_000836_310--Hb_012496_010 Hb_000340_060 Hb_000340_060 Hb_000836_310--Hb_000340_060 Hb_000032_150 Hb_000032_150 Hb_000836_310--Hb_000032_150 Hb_000127_220--Hb_012496_010 Hb_000422_050 Hb_000422_050 Hb_000127_220--Hb_000422_050 Hb_000127_220--Hb_000340_060 Hb_000127_220--Hb_004032_220 Hb_001257_040 Hb_001257_040 Hb_000127_220--Hb_001257_040 Hb_007858_020 Hb_007858_020 Hb_004032_220--Hb_007858_020 Hb_004032_220--Hb_000032_150 Hb_124953_010 Hb_124953_010 Hb_004032_220--Hb_124953_010 Hb_004032_220--Hb_001257_040 Hb_005054_330 Hb_005054_330 Hb_004032_220--Hb_005054_330 Hb_005618_020 Hb_005618_020 Hb_106810_010--Hb_005618_020 Hb_000086_600 Hb_000086_600 Hb_106810_010--Hb_000086_600 Hb_015978_040 Hb_015978_040 Hb_106810_010--Hb_015978_040 Hb_022768_010 Hb_022768_010 Hb_106810_010--Hb_022768_010 Hb_032966_010 Hb_032966_010 Hb_106810_010--Hb_032966_010 Hb_035677_010 Hb_035677_010 Hb_012496_010--Hb_035677_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_006907_020 Hb_006907_020 Hb_012496_010--Hb_006907_020 Hb_012496_010--Hb_000422_050 Hb_000340_060--Hb_001257_040 Hb_000340_060--Hb_004032_220 Hb_008143_020 Hb_008143_020 Hb_000340_060--Hb_008143_020 Hb_000340_060--Hb_007858_020 Hb_047955_010 Hb_047955_010 Hb_000032_150--Hb_047955_010 Hb_000032_150--Hb_124953_010 Hb_000032_150--Hb_001257_040 Hb_003207_230 Hb_003207_230 Hb_000032_150--Hb_003207_230 Hb_000032_150--Hb_007858_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139641 1310.33 480.667 122.383 0.294089 0.160092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0376081 0.207091 0 4.80613 52.8964

CAGE analysis