Hb_000836_360

Information

Type -
Description -
Location Contig836: 270843-282746
Sequence    

Annotation

kegg
ID rcu:RCOM_1616500
description hypothetical protein
nr
ID XP_012083317.1
description PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14340 PE=4 SV=1
Gene Ontology
ID GO:0016043
description chorismate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59947: 271086-282577 , PASA_asmbl_59948: 271590-282577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_360 0.0 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
2 Hb_000953_010 0.0666807128 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
3 Hb_002307_100 0.0739136282 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
4 Hb_002477_160 0.0758695081 - - hypothetical protein L484_013453 [Morus notabilis]
5 Hb_001516_100 0.0798253256 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000184_130 0.0804768641 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
7 Hb_005324_010 0.0840685931 - - Chaperone protein dnaJ, putative [Ricinus communis]
8 Hb_000661_050 0.0858365989 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
9 Hb_175338_030 0.086824141 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
10 Hb_000619_080 0.0902531145 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
11 Hb_000190_140 0.0908313714 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
12 Hb_000175_450 0.091417359 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
13 Hb_000173_400 0.091675508 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
14 Hb_000120_800 0.0920583813 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
15 Hb_004046_010 0.0922380774 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
16 Hb_004055_040 0.0936673641 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
17 Hb_000754_060 0.0940357738 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
18 Hb_005307_030 0.0940578121 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
19 Hb_000915_050 0.0962115134 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001047_020 0.0964065757 - - -

Gene co-expression network

sample Hb_000836_360 Hb_000836_360 Hb_000953_010 Hb_000953_010 Hb_000836_360--Hb_000953_010 Hb_002307_100 Hb_002307_100 Hb_000836_360--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_000836_360--Hb_002477_160 Hb_001516_100 Hb_001516_100 Hb_000836_360--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_000836_360--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000836_360--Hb_005324_010 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_175338_030 Hb_175338_030 Hb_002307_100--Hb_175338_030 Hb_002307_100--Hb_002477_160 Hb_007757_110 Hb_007757_110 Hb_002307_100--Hb_007757_110 Hb_010175_020 Hb_010175_020 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_002477_160--Hb_175338_030 Hb_002477_160--Hb_007558_140 Hb_000120_950 Hb_000120_950 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_011918_080 Hb_011918_080 Hb_002477_160--Hb_011918_080 Hb_001516_100--Hb_004734_060 Hb_001516_100--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_001516_100--Hb_000808_180 Hb_000977_070 Hb_000977_070 Hb_001516_100--Hb_000977_070 Hb_001516_100--Hb_033152_080 Hb_000370_030 Hb_000370_030 Hb_000184_130--Hb_000370_030 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_004204_020 Hb_004204_020 Hb_000184_130--Hb_004204_020 Hb_003362_040 Hb_003362_040 Hb_000184_130--Hb_003362_040 Hb_002039_010 Hb_002039_010 Hb_000184_130--Hb_002039_010 Hb_000184_130--Hb_004734_060 Hb_005306_130 Hb_005306_130 Hb_005324_010--Hb_005306_130 Hb_005324_010--Hb_004734_060 Hb_000209_020 Hb_000209_020 Hb_005324_010--Hb_000209_020 Hb_005324_010--Hb_000953_010 Hb_005324_010--Hb_033152_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.958 57.7957 13.7263 25.4641 66.2571 111.291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.8231 46.5762 95.9222 31.2616 19.1516

CAGE analysis