Hb_000836_390

Information

Type -
Description -
Location Contig836: 317671-320070
Sequence    

Annotation

kegg
ID fve:101309084
description uncharacterized protein LOC101309084
nr
ID XP_012437685.1
description PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2U1M8
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G119800 PE=4 SV=1
Gene Ontology
ID GO:0046872
description fk506-binding protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59962: 317699-320071 , PASA_asmbl_59963: 319057-319351 , PASA_asmbl_59965: 318235-318487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_390 0.0 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
2 Hb_007765_140 0.0696103661 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
3 Hb_008215_010 0.0758656956 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000120_070 0.0780198909 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
5 Hb_075449_040 0.1081371273 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
6 Hb_003376_200 0.1122449053 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000075_110 0.1133536942 - - aldo-keto reductase, putative [Ricinus communis]
8 Hb_001894_040 0.1143043236 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
9 Hb_000579_180 0.1143117248 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
10 Hb_000085_230 0.1152723706 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
11 Hb_165404_010 0.1153771898 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
12 Hb_008406_020 0.1228306735 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
13 Hb_004447_020 0.123454873 - - carbohydrate binding protein, putative [Ricinus communis]
14 Hb_001102_270 0.1258257262 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
15 Hb_001636_010 0.1266857077 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
16 Hb_003807_020 0.1280947959 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
17 Hb_001355_110 0.1285094657 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
18 Hb_000008_080 0.1287581566 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000407_080 0.1339010742 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
20 Hb_000359_280 0.1340091553 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_000836_390 Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_000836_390--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000836_390--Hb_008215_010 Hb_000120_070 Hb_000120_070 Hb_000836_390--Hb_000120_070 Hb_075449_040 Hb_075449_040 Hb_000836_390--Hb_075449_040 Hb_003376_200 Hb_003376_200 Hb_000836_390--Hb_003376_200 Hb_000075_110 Hb_000075_110 Hb_000836_390--Hb_000075_110 Hb_165404_010 Hb_165404_010 Hb_007765_140--Hb_165404_010 Hb_007765_140--Hb_000075_110 Hb_007765_140--Hb_075449_040 Hb_007765_140--Hb_008215_010 Hb_007765_140--Hb_000120_070 Hb_008215_010--Hb_000120_070 Hb_008215_010--Hb_000075_110 Hb_000046_590 Hb_000046_590 Hb_008215_010--Hb_000046_590 Hb_008215_010--Hb_165404_010 Hb_000120_070--Hb_000075_110 Hb_003556_070 Hb_003556_070 Hb_000120_070--Hb_003556_070 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150 Hb_046101_010 Hb_046101_010 Hb_075449_040--Hb_046101_010 Hb_075449_040--Hb_000075_110 Hb_000359_280 Hb_000359_280 Hb_075449_040--Hb_000359_280 Hb_075449_040--Hb_165404_010 Hb_134017_010 Hb_134017_010 Hb_003376_200--Hb_134017_010 Hb_074312_020 Hb_074312_020 Hb_003376_200--Hb_074312_020 Hb_004447_020 Hb_004447_020 Hb_003376_200--Hb_004447_020 Hb_001862_060 Hb_001862_060 Hb_003376_200--Hb_001862_060 Hb_000407_080 Hb_000407_080 Hb_003376_200--Hb_000407_080 Hb_008406_020 Hb_008406_020 Hb_003376_200--Hb_008406_020 Hb_000075_110--Hb_165404_010 Hb_000598_020 Hb_000598_020 Hb_000075_110--Hb_000598_020 Hb_000075_110--Hb_006970_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86314 308.151 114.587 114.508 1.89798 1.01793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71484 2.07788 0.269614 292.285 31.2522

CAGE analysis