Hb_000836_410

Information

Type -
Description -
Location Contig836: 343035-367187
Sequence    

Annotation

kegg
ID rcu:RCOM_1616650
description sec10, putative
nr
ID XP_002511919.1
description sec10, putative [Ricinus communis]
swissprot
ID Q8RVQ5
description Exocyst complex component SEC10 OS=Arabidopsis thaliana GN=SEC10 PE=1 SV=2
trembl
ID B9RDY0
description Sec10, putative OS=Ricinus communis GN=RCOM_1616650 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59969: 343100-344085 , PASA_asmbl_59970: 343108-344136 , PASA_asmbl_59972: 365479-366577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_410 0.0 - - sec10, putative [Ricinus communis]
2 Hb_000390_230 0.0473026771 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
3 Hb_008568_020 0.0548711718 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
4 Hb_000230_090 0.0590711742 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
5 Hb_002701_150 0.0592005671 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
6 Hb_000457_230 0.0614129881 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000243_210 0.0618067894 - - protein with unknown function [Ricinus communis]
8 Hb_000563_130 0.0632746153 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
9 Hb_008059_010 0.0651291222 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
10 Hb_004976_010 0.0654407293 - - hypothetical protein RCOM_1429110 [Ricinus communis]
11 Hb_000914_120 0.0656446267 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
12 Hb_154580_010 0.0663071774 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
13 Hb_000645_170 0.0664374913 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003186_020 0.0664702447 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
15 Hb_002615_120 0.0669249419 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
16 Hb_000115_280 0.0673253834 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
17 Hb_007044_110 0.0684536284 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000398_080 0.0703171352 - - tip120, putative [Ricinus communis]
19 Hb_000174_060 0.070462869 - - zinc finger family protein [Populus trichocarpa]
20 Hb_003927_040 0.0705229354 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_410 Hb_000836_410 Hb_000390_230 Hb_000390_230 Hb_000836_410--Hb_000390_230 Hb_008568_020 Hb_008568_020 Hb_000836_410--Hb_008568_020 Hb_000230_090 Hb_000230_090 Hb_000836_410--Hb_000230_090 Hb_002701_150 Hb_002701_150 Hb_000836_410--Hb_002701_150 Hb_000457_230 Hb_000457_230 Hb_000836_410--Hb_000457_230 Hb_000243_210 Hb_000243_210 Hb_000836_410--Hb_000243_210 Hb_004994_010 Hb_004994_010 Hb_000390_230--Hb_004994_010 Hb_000115_280 Hb_000115_280 Hb_000390_230--Hb_000115_280 Hb_000567_070 Hb_000567_070 Hb_000390_230--Hb_000567_070 Hb_000563_130 Hb_000563_130 Hb_000390_230--Hb_000563_130 Hb_138435_010 Hb_138435_010 Hb_000390_230--Hb_138435_010 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000914_120 Hb_000914_120 Hb_000230_090--Hb_000914_120 Hb_000679_340 Hb_000679_340 Hb_000230_090--Hb_000679_340 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_008695_110 Hb_008695_110 Hb_000230_090--Hb_008695_110 Hb_000236_470 Hb_000236_470 Hb_002701_150--Hb_000236_470 Hb_001636_050 Hb_001636_050 Hb_002701_150--Hb_001636_050 Hb_002701_150--Hb_000679_340 Hb_002701_150--Hb_000230_090 Hb_012565_050 Hb_012565_050 Hb_002701_150--Hb_012565_050 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.08414 5.80181 6.49489 3.69582 5.46586 5.60942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4722 3.51151 2.73529 4.19449 4.82347

CAGE analysis